RNA id: TU66735


Basic Information

Item Value
RNA id TU66735
length 451
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G49351
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3233674 ~ 3234451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtccaccccacgcgggagggtgctgccttactttcatgcagcatagctcatagtcttttagctagtcggcagagtagtattagaagctgctgacaatccagagccgggaccaggccgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacatcaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatattagatctctaaattcaaaagcagttctagtgaatgaaatgataactgatcagaaattcgatattctgtgtctgacagaaacctggattaggccaaatgaatatgtagcattaaatgaagccacccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66451 lncRNA upstream 83413 2657196 ~ 3150588 (+) True G49146
TU66516 lncRNA upstream 133914 3096363 ~ 3100087 (+) True G49185
TU66483 lncRNA upstream 257972 2955254 ~ 2976029 (+) True G49162
TU66485 lncRNA upstream 364480 2867462 ~ 2869521 (+) True G49164
TU66484 lncRNA upstream 393218 2840312 ~ 2840783 (+) True G49163
TU66743 lncRNA downstream 620 3235071 ~ 3235275 (+) True G49354
TU66744 lncRNA downstream 1581 3236032 ~ 3236433 (+) True G49355
TU66754 lncRNA downstream 16931 3251382 ~ 3254354 (+) True G49365
TU66756 lncRNA downstream 28694 3263145 ~ 3263661 (+) True G49366
TU66773 lncRNA downstream 148809 3383260 ~ 3383890 (+) False G49381
XM_007231666.3 mRNA upstream 58242 3172009 ~ 3175759 (+) True dmrta2
XM_022671018.1 mRNA upstream 81951 2982895 ~ 3152050 (+) True faf1
XM_007231669.3 mRNA upstream 316570 2881685 ~ 2917431 (+) True rnf11
XM_022671017.1 mRNA upstream 357573 2828935 ~ 2876428 (+) True ttc39a
XM_022671006.1 mRNA upstream 424577 2747845 ~ 2809424 (+) True eps15
XM_022671025.1 mRNA downstream 285157 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA downstream 786002 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 787464 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 965488 4199939 ~ 4230987 (+) True spata6
XM_022670972.1 mRNA downstream 1159250 4393701 ~ 4519665 (+) True bcar3
TU66507 other upstream 220371 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 220371 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 220371 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 2422736 808155 ~ 811265 (+) True G48714
TU66895 other downstream 1010077 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2384708 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2542601 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 3137069 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3749739 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile