RNA id: TU66744


Basic Information

Item Value
RNA id TU66744
length 402
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G49355
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3236032 ~ 3236433 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTCcttactcgtacttctcgatctgagcgcagcctttgatacaatagatcatactatccttttagaaagactagagaacatggtcggtgtaaccggaactgccttagcatggtttaaatcgtacttaaccgatcgctatcagtttgtgaggataaatgatatgtcttccagttataccaaggtaagatatggaattccacaaggctctatattaggaccgttattatttacattatatatgctcccactgggcaaagttattagaaaacacaatgtgaattttcattgttatgcggatgacacgcagctcttcatatcagccaaacctgatgacagagtgagattaaagaaaattgaggattgtgtagaagatgtaaaatcatggatgtcgcacaacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66743 lncRNA upstream 757 3235071 ~ 3235275 (+) True G49354
TU66736 lncRNA upstream 1581 3233674 ~ 3234451 (+) True G49351
TU66737 lncRNA upstream 1581 3233708 ~ 3234451 (+) False G49351
TU66735 lncRNA upstream 1581 3234001 ~ 3234451 (+) False G49351
TU66738 lncRNA upstream 1624 3233708 ~ 3234408 (+) False G49351
TU66754 lncRNA downstream 14949 3251382 ~ 3254354 (+) True G49365
TU66756 lncRNA downstream 26712 3263145 ~ 3263661 (+) True G49366
TU66773 lncRNA downstream 146827 3383260 ~ 3383890 (+) False G49381
TU66774 lncRNA downstream 146827 3383260 ~ 3383890 (+) False G49381
TU66775 lncRNA downstream 146827 3383260 ~ 3416861 (+) True G49381
XM_007231666.3 mRNA upstream 60273 3172009 ~ 3175759 (+) True dmrta2
XM_022671018.1 mRNA upstream 83982 2982895 ~ 3152050 (+) True faf1
XM_007231669.3 mRNA upstream 318601 2881685 ~ 2917431 (+) True rnf11
XM_022671017.1 mRNA upstream 359604 2828935 ~ 2876428 (+) True ttc39a
XM_022671006.1 mRNA upstream 426608 2747845 ~ 2809424 (+) True eps15
XM_022671025.1 mRNA downstream 283175 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA downstream 784020 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 785482 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 963506 4199939 ~ 4230987 (+) True spata6
XM_022670972.1 mRNA downstream 1157268 4393701 ~ 4519665 (+) True bcar3
TU66507 other upstream 222402 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 222402 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 222402 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 2424767 808155 ~ 811265 (+) True G48714
TU66895 other downstream 1008095 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2382726 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2540619 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 3135087 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3747757 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile