RNA id: TU66775


Basic Information

Item Value
RNA id TU66775
length 639
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G49381
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3383260 ~ 3416861 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acgcgtttttttgcccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCAATTTTTGAAATACGAAGATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGATTGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCAATCGGAGGACGGCAGCTAGATCGAAGGACAGGTAGCTAgaactccagtactgtgtgtaatggagcagCTATGGGATAAAACAGCattaggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggcccccagtactgtgtgtaatggagccacaggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagcaactggtcaaaagtttgggtaccccGGTCAGCtctgcaatcacactcgcagtttctgtaggaactgcaatctagttattattatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66756 lncRNA upstream 119599 3263145 ~ 3263661 (+) True G49366
TU66754 lncRNA upstream 128906 3251382 ~ 3254354 (+) True G49365
TU66744 lncRNA upstream 146827 3236032 ~ 3236433 (+) True G49355
TU66743 lncRNA upstream 147985 3235071 ~ 3235275 (+) True G49354
TU66739 lncRNA upstream 148852 3234001 ~ 3234408 (+) False G49351
TU66779 lncRNA downstream 34916 3451777 ~ 3452462 (+) True G49385
TU66802 lncRNA downstream 149470 3566331 ~ 3593543 (+) True G49401
TU66807 lncRNA downstream 179641 3596502 ~ 3634177 (+) True G49406
TU66792 lncRNA downstream 549732 3966593 ~ 4052875 (+) True G49397
TU66800 lncRNA downstream 625917 4042778 ~ 4055761 (+) True G49399
XM_007231666.3 mRNA upstream 207501 3172009 ~ 3175759 (+) True dmrta2
XM_022671018.1 mRNA upstream 231210 2982895 ~ 3152050 (+) True faf1
XM_007231669.3 mRNA upstream 465829 2881685 ~ 2917431 (+) True rnf11
XM_022671017.1 mRNA upstream 506832 2828935 ~ 2876428 (+) True ttc39a
XM_022671006.1 mRNA upstream 573836 2747845 ~ 2809424 (+) True eps15
XM_022671025.1 mRNA downstream 102747 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA downstream 603592 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 605054 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 783078 4199939 ~ 4230987 (+) True spata6
XM_022670972.1 mRNA downstream 976840 4393701 ~ 4519665 (+) True bcar3
TU66507 other upstream 369630 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 369630 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 369630 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 2571995 808155 ~ 811265 (+) True G48714
TU66895 other downstream 827667 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2202298 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2360191 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 2954659 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3567329 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile