RNA id: TU66802


Basic Information

Item Value
RNA id TU66802
length 354
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G49401
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3566331 ~ 3593543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacacaactgttccatgcactttatacttgcgtataattgtctgcacagttgctcttgggacctgtagctgctttgaaatggctccaagtgacttccctgacttgttcaagtcaataattcgctttttcagatccacactgagttcctttgactttcccattgtagcttttgtagctgagtctaatcactgggtcaaatgagccctatttaaatgggctcatgagaagtcaacagctgtagtcaatcagaatcacttacaagaagtgaagaggccatgacatgaagctaatttgattgacacaactcgctacatcaccaaaattgacaaattttgttgctgtatgtgtattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66779 lncRNA upstream 113869 3451777 ~ 3452462 (+) True G49385
TU66775 lncRNA upstream 149470 3383260 ~ 3416861 (+) True G49381
TU66773 lncRNA upstream 182441 3383260 ~ 3383890 (+) False G49381
TU66774 lncRNA upstream 182441 3383260 ~ 3383890 (+) False G49381
TU66756 lncRNA upstream 302670 3263145 ~ 3263661 (+) True G49366
TU66807 lncRNA downstream 2959 3596502 ~ 3634177 (+) True G49406
TU66792 lncRNA downstream 373050 3966593 ~ 4052875 (+) True G49397
TU66800 lncRNA downstream 449235 4042778 ~ 4055761 (+) True G49399
TU66865 lncRNA downstream 520169 4113712 ~ 4218334 (+) True G49460
TU66877 lncRNA downstream 635968 4229511 ~ 4230963 (+) False spata6
XM_007231666.3 mRNA upstream 390572 3172009 ~ 3175759 (+) True dmrta2
XM_022671018.1 mRNA upstream 414281 2982895 ~ 3152050 (+) True faf1
XM_007231669.3 mRNA upstream 648900 2881685 ~ 2917431 (+) True rnf11
XM_022671017.1 mRNA upstream 689903 2828935 ~ 2876428 (+) True ttc39a
XM_022671006.1 mRNA upstream 756907 2747845 ~ 2809424 (+) True eps15
XM_007235278.2 mRNA downstream 426910 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 428372 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 606396 4199939 ~ 4230987 (+) True spata6
XM_022670972.1 mRNA downstream 800158 4393701 ~ 4519665 (+) True bcar3
XM_022671039.1 mRNA downstream 1296165 4889708 ~ 4909202 (+) True pdpn
TU66507 other upstream 552701 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 552701 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 552701 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 2755066 808155 ~ 811265 (+) True G48714
TU66895 other downstream 650985 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2025616 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2183509 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 2777977 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3390647 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile