RNA id: TU66807


Basic Information

Item Value
RNA id TU66807
length 333
lncRNA type intronic
GC content 0.38
exon number 2
gene id G49406
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3596502 ~ 3634177 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttgaaaaaaaaaaaatcaaatcagtgttttttaatatcaaatcaaatttatttgtatagcgctttttacaactgatgttggcacaaagcagctttacagaaacatgattacaggacaaagaatcaggcaaaacattaaacatagaaaatacagaacccccagtgagcgcggaggcaaggaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaggactcacatttgaggggggaccatcctaccactggtcaaacggcttttaaattaaaatttaaaaagtcttttatacatccacataggttttatgtaTTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66802 lncRNA upstream 2959 3566331 ~ 3593543 (+) True G49401
TU66779 lncRNA upstream 144040 3451777 ~ 3452462 (+) True G49385
TU66775 lncRNA upstream 179641 3383260 ~ 3416861 (+) True G49381
TU66773 lncRNA upstream 212612 3383260 ~ 3383890 (+) False G49381
TU66774 lncRNA upstream 212612 3383260 ~ 3383890 (+) False G49381
TU66792 lncRNA downstream 332416 3966593 ~ 4052875 (+) True G49397
TU66800 lncRNA downstream 408601 4042778 ~ 4055761 (+) True G49399
TU66865 lncRNA downstream 479535 4113712 ~ 4218334 (+) True G49460
TU66877 lncRNA downstream 595334 4229511 ~ 4230963 (+) False spata6
TU66878 lncRNA downstream 595334 4229511 ~ 4239873 (+) False spata6
XM_007231666.3 mRNA upstream 420743 3172009 ~ 3175759 (+) True dmrta2
XM_022671018.1 mRNA upstream 444452 2982895 ~ 3152050 (+) True faf1
XM_007231669.3 mRNA upstream 679071 2881685 ~ 2917431 (+) True rnf11
XM_022671017.1 mRNA upstream 720074 2828935 ~ 2876428 (+) True ttc39a
XM_022671006.1 mRNA upstream 787078 2747845 ~ 2809424 (+) True eps15
XM_007235278.2 mRNA downstream 386276 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 387738 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 565762 4199939 ~ 4230987 (+) True spata6
XM_022670972.1 mRNA downstream 759524 4393701 ~ 4519665 (+) True bcar3
XM_022671039.1 mRNA downstream 1255531 4889708 ~ 4909202 (+) True pdpn
TU66507 other upstream 582872 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 582872 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 582872 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 2785237 808155 ~ 811265 (+) True G48714
TU66895 other downstream 610351 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 1984982 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2142875 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 2737343 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3350013 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile