RNA id: TU67047



Basic Information


Item Value
RNA id TU67047
length 277
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G49586
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4404029 ~ 4453720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tttgctctgattactgctttgcacactcttggcatcattctctatatgagcttcaagaggtggccacctgaaatgaaaagttttccaacagtcttgaatgaaggagttcccagaggtgtttattagcacttgttgcccctttgtcttcttcactctgtgctccagctcaccccaaaccatctggattgggttcaggtccggtgactgtggaggttcagctcattttttattgttaagtacataaaacttcacatgtgttcattcatagttttgatgc

Function


GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_002650133.1 lncRNA upstream 38450 4330195 ~ 4365579 (+) True LOC111192750
TU67028 lncRNA upstream 106462 4294830 ~ 4297567 (+) True G49571
TU66896 lncRNA upstream 158802 4244528 ~ 4245227 (+) False G49475
TU66878 lncRNA upstream 164156 4229511 ~ 4239873 (+) False spata6
TU66877 lncRNA upstream 173066 4229511 ~ 4230963 (+) False spata6
TU67052 lncRNA downstream 17799 4471519 ~ 4525653 (+) True G49589
TU67048 lncRNA downstream 72438 4526158 ~ 4632053 (+) True G49587
TU67049 lncRNA downstream 72438 4526158 ~ 4552226 (+) False G49587
TU67069 lncRNA downstream 184817 4638537 ~ 4641062 (+) True G49606
TU67078 lncRNA downstream 201034 4654754 ~ 4658061 (+) True G49615
XM_022671029.1 mRNA upstream 173042 4199939 ~ 4230987 (+) True spata6
XM_022671025.1 mRNA upstream 209315 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA upstream 362327 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA upstream 362327 4021915 ~ 4041702 (+) False bend5
XM_007231666.3 mRNA upstream 1228270 3172009 ~ 3175759 (+) True dmrta2
XM_022671039.1 mRNA downstream 435988 4889708 ~ 4909202 (+) True pdpn
XM_022671040.1 mRNA downstream 435992 4889712 ~ 4909202 (+) False pdpn
XM_007236385.3 mRNA downstream 476824 4930544 ~ 4943083 (+) True LOC103034196
XM_022671041.1 mRNA downstream 482786 4936506 ~ 4943083 (+) False LOC103034196
XM_022671042.1 mRNA downstream 500557 4954277 ~ 4993901 (+) True LOC103035057
TU66895 other upstream 157802 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 1390399 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 1390399 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 1390399 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 3592764 808155 ~ 811265 (+) True G48714
TU67370 other downstream 1165439 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 1323332 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 1917800 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 2530470 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 3753622 8207342 ~ 8221162 (+) True G50568

Expression Profile