RNA id: TU67076


Basic Information

Item Value
RNA id TU67076
length 1707
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G49613
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4725356 ~ 4755688 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAAGTGAATTCCAGCATGGTACCATggtaggatgcagcacctgcgCAAAaagtcgtgaaatttcctccTCACTACTACaaattccacagccaactgtcagtgatataaCAAACgtaattaagagaatttgtaCCACATGTACATTTGTGTGTTTCGAGCCATGCAAGGTTTCCCAACGTTacaacagcaaagacacactgataggCCCTAAACCAAGGTGCAGGGTGTAGATCaagggtcggcaattaagttttttgtgcgcgggccagatattttccaagccattacgtggcgaaccacgaaaaaaaatctgttttggaaacaaaaagtgtaatgggatggagctagagactagtagctctccagcccagagggttgttgaacctaattgcagaacagttgatctcaaagcaggtaaacccaagaagaaaaggggagagaaaaaaaaaacacacacccggGAATCAGGCTGTGCATctacagtggcaagaaaaagtatgtaaaatcTTTTGGAATATCATGCTTTTCACCATAAatgcttgagtaaaatcaacatttttgttttattctataaactacagacaatatttctcccaaattccaaataaaaaatagccatttagaaattttagagcaattatttgcagaaaatgagaaatggctgaaataacaaaaaaagatgcaaagctttcagacctcaaataactcaaagaattttaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaaaaaccctggtttttaatcacagttttcatgcatcttggtatcattTTCTCcgccaccagtcttacacactgcttttggataactttatgctgctttactcctggtacaaaaatttaagcagttcagttaagtttggcatcttcctcttgattatattctagagtttttaatttggtaaaatcaaggaaaaacatcatttttaagggcTCTCtcatttttcagagctgtataacagcattttattaataaagattgTGAAGTACAGCATGGATCACATTTTAGGTcaaatttatgcaaaaaaacacatgaaattaaaaaggggttcacatacttttttttcttgacaCTGTATCTGAATATTATGTGTAACAGTTGTCTGTGGAATTGTTTGAAGGTACCTTTTCCTATTACCAACCCATGTGAACAATTTAGAACAAGAGAACAGTGCATTTCACATGAAGCTATTCTGAAtcatttctgtacatttttacagttcgattttttttttttttagaaactacagctgaagtacagtaccagtcaaaagtgtggGCGAACCTTAAATTcttgaatttcttgcctcttaataaagtgtttgagagtatcagttaaagtaaagtagtgaagaggtagagttacaggtatacagtgaatagtgaatatttgagtaatgttctaatccagattatgagaagcaagaaatactcagctaaataaagaaaaaatgactaagaaaAAATGATGGTCATTCAATCtgaaagaagaatttcaagaactttgaaagtatcctaaaGTGTAGtggcaaaaaagaccatcaaaaatgttatgaggatgaaactggcactcatcaggaccgcccgaggaaaggatagaagagcaagagtttcctctgttgtacaggataagttaatcagagttaccagcctcagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67078 lncRNA upstream 67295 4654754 ~ 4658061 (+) True G49615
TU67069 lncRNA upstream 84294 4638537 ~ 4641062 (+) True G49606
TU67048 lncRNA upstream 93303 4526158 ~ 4632053 (+) True G49587
TU67049 lncRNA upstream 173130 4526158 ~ 4552226 (+) False G49587
TU67052 lncRNA upstream 199703 4471519 ~ 4525653 (+) True G49589
TU67111 lncRNA downstream 33537 4789225 ~ 4790020 (+) False G49646
TU67112 lncRNA downstream 33537 4789225 ~ 4790020 (+) True G49646
TU67115 lncRNA downstream 66709 4822397 ~ 4847422 (+) True G49649
TU67133 lncRNA downstream 133627 4889315 ~ 4947765 (+) True G49666
XR_001518342.2 lncRNA downstream 242138 4997826 ~ 5002094 (+) True LOC107197045
XM_022670972.1 mRNA upstream 205691 4393701 ~ 4519665 (+) True bcar3
XM_022671029.1 mRNA upstream 494369 4199939 ~ 4230987 (+) True spata6
XM_022671025.1 mRNA upstream 530642 3519608 ~ 4194714 (+) True agbl4
XM_022671039.1 mRNA downstream 134020 4889708 ~ 4909202 (+) True pdpn
XM_022671040.1 mRNA downstream 134024 4889712 ~ 4909202 (+) False pdpn
XM_007236385.3 mRNA downstream 174856 4930544 ~ 4943083 (+) True LOC103034196
XM_022671041.1 mRNA downstream 180818 4936506 ~ 4943083 (+) False LOC103034196
XM_022671042.1 mRNA downstream 198589 4954277 ~ 4993901 (+) True LOC103035057
TU66895 other upstream 479129 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 1711726 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 1711726 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 1711726 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 3914091 808155 ~ 811265 (+) True G48714
TU67370 other downstream 863471 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 1021364 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 1615832 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 2228502 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 3451654 8207342 ~ 8221162 (+) True G50568

Expression Profile