RNA id: TU67153


Basic Information

Item Value
RNA id TU67153
length 481
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G49684
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5037669 ~ 5038409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacgggccacagagtctaaaagcggagagagtgcgcatttctagtgcagaaaaacgggccaaagagtctaaaagttgccgtaattaaggagtttaatattaagagacatcgtgaaatgaaacatcaatttgaaaaatcttagtttacacaacactgtcaaagataaagatagtaagtcaagtaaaatggtgtgtaaatgaaagtaatcaggaaaaaagtattatttaaagtggtatatttcattatttgttttattacagagtctgtggcccgtgacttcaaatatatttctccttctggcccccaacaaaaaacacCCCTGGCTAACATGGTTCCCACTGGTCACTATGTTATCTTTTAAATGGAGCCACATTATaagtactaggggtgggcaatattatatcgtatacaatatatcgtgacacagaaatatcatgatattaaaaatccatatcgtgataatagagatgttctgtctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67150 lncRNA upstream 11467 5022072 ~ 5026202 (+) True G49682
TU67140 lncRNA upstream 34047 5002609 ~ 5003622 (+) True G49673
XR_001518342.2 lncRNA upstream 35575 4997826 ~ 5002094 (+) True LOC107197045
TU67133 lncRNA upstream 89904 4889315 ~ 4947765 (+) True G49666
TU67115 lncRNA upstream 190247 4822397 ~ 4847422 (+) True G49649
TU67166 lncRNA downstream 60339 5098748 ~ 5099463 (+) True G49697
TU67167 lncRNA downstream 61705 5100114 ~ 5100348 (+) True G49698
TU67275 lncRNA downstream 104847 5143256 ~ 5143529 (+) True G49787
TU67276 lncRNA downstream 110012 5148421 ~ 5148655 (+) True G49788
TU67277 lncRNA downstream 116733 5155142 ~ 5159172 (+) True G49789
XM_022671042.1 mRNA upstream 43768 4954277 ~ 4993901 (+) True LOC103035057
XM_007236385.3 mRNA upstream 94586 4930544 ~ 4943083 (+) True LOC103034196
XM_022671041.1 mRNA upstream 94586 4936506 ~ 4943083 (+) False LOC103034196
XM_022671039.1 mRNA upstream 128467 4889708 ~ 4909202 (+) True pdpn
XM_022671049.1 mRNA downstream 162621 5201030 ~ 5210826 (+) True nfya
XM_022671048.1 mRNA downstream 162621 5201030 ~ 5207421 (+) False nfya
XM_022671046.1 mRNA downstream 174995 5213404 ~ 5258615 (+) True ahcyl1
XM_022671047.1 mRNA downstream 174995 5213404 ~ 5258615 (+) False ahcyl1
XM_022671045.1 mRNA downstream 228269 5266678 ~ 5271005 (+) True LOC103043955
TU66895 other upstream 791442 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2024039 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2024039 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2024039 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4226404 808155 ~ 811265 (+) True G48714
TU67370 other downstream 580750 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 738643 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 1333111 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1945781 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 3168933 8207342 ~ 8221162 (+) True G50568

Expression Profile