RNA id: TU67275


Basic Information

Item Value
RNA id TU67275
length 274
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G49787
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5143256 ~ 5143529 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cggttcacattcactgtaaatgtaagtgatctgtatctgtgtgtaatgtgaacgaatctgtccctgaaacaccgtctcacatgctgcacattgatacctgtataaacgtctccttcttcaccaacaacaaaaaaaactcatattagagagacgagagactcgtagctttatgaagggaaatggatgagtttgttagcagctcatatgtggagcatcttttgctggagtggagaaacagtaaacagctgctctgaagttcatgctcaggtcaagG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67167 lncRNA upstream 42908 5100114 ~ 5100348 (+) True G49698
TU67166 lncRNA upstream 43793 5098748 ~ 5099463 (+) True G49697
TU67153 lncRNA upstream 104847 5037669 ~ 5038409 (+) True G49684
TU67150 lncRNA upstream 117054 5022072 ~ 5026202 (+) True G49682
TU67140 lncRNA upstream 139634 5002609 ~ 5003622 (+) True G49673
TU67276 lncRNA downstream 4892 5148421 ~ 5148655 (+) True G49788
TU67277 lncRNA downstream 11613 5155142 ~ 5159172 (+) True G49789
TU67278 lncRNA downstream 11613 5155142 ~ 5159172 (+) False G49789
TU67281 lncRNA downstream 56961 5200490 ~ 5200717 (+) True G49792
TU67293 lncRNA downstream 83892 5227421 ~ 5265359 (+) True G49801
XM_022671042.1 mRNA upstream 149355 4954277 ~ 4993901 (+) True LOC103035057
XM_007236385.3 mRNA upstream 200173 4930544 ~ 4943083 (+) True LOC103034196
XM_022671041.1 mRNA upstream 200173 4936506 ~ 4943083 (+) False LOC103034196
XM_022671039.1 mRNA upstream 234054 4889708 ~ 4909202 (+) True pdpn
XM_022671049.1 mRNA downstream 57501 5201030 ~ 5210826 (+) True nfya
XM_022671048.1 mRNA downstream 57501 5201030 ~ 5207421 (+) False nfya
XM_022671046.1 mRNA downstream 69875 5213404 ~ 5258615 (+) True ahcyl1
XM_022671047.1 mRNA downstream 69875 5213404 ~ 5258615 (+) False ahcyl1
XM_022671045.1 mRNA downstream 123149 5266678 ~ 5271005 (+) True LOC103043955
TU66895 other upstream 897029 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2129626 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2129626 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2129626 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4331991 808155 ~ 811265 (+) True G48714
TU67370 other downstream 475630 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 633523 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 1227991 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1840661 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 3063813 8207342 ~ 8221162 (+) True G50568

Expression Profile