RNA id: TU67335


Basic Information

Item Value
RNA id TU67335
length 209
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G49837
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5431429 ~ 5431637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

Tttaccttaaaacatctcctaatctctcctcctaatctgagtttaatagagttatttctagttctcatcatattaatcaacacctggtttggtaaattttggtaaatgtggtaaatcaggtgagctgctgatggaactgaacataatatacacatgctggctgaggagcatccaggagaaatctggaatctctacactttgttcttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67293 lncRNA upstream 166070 5227421 ~ 5265359 (+) True G49801
TU67281 lncRNA upstream 230712 5200490 ~ 5200717 (+) True G49792
TU67277 lncRNA upstream 272257 5155142 ~ 5159172 (+) True G49789
TU67278 lncRNA upstream 272257 5155142 ~ 5159172 (+) False G49789
TU67276 lncRNA upstream 282774 5148421 ~ 5148655 (+) True G49788
TU67336 lncRNA downstream 10772 5442409 ~ 5442685 (+) True G49838
TU67354 lncRNA downstream 83924 5515561 ~ 5515859 (+) True G49855
TU67352 lncRNA downstream 98169 5529806 ~ 5537630 (+) False LOC111192752
XR_002650135.1 lncRNA downstream 105378 5537015 ~ 5538913 (+) True LOC111192752
TU67368 lncRNA downstream 174366 5606003 ~ 5606600 (+) True G49868
XM_007232973.3 mRNA upstream 112981 5274656 ~ 5318448 (+) True kcnc4
XM_022671045.1 mRNA upstream 160424 5266678 ~ 5271005 (+) True LOC103043955
XM_022671046.1 mRNA upstream 172814 5213404 ~ 5258615 (+) True ahcyl1
XM_022671047.1 mRNA upstream 172814 5213404 ~ 5258615 (+) False ahcyl1
XM_022671049.1 mRNA upstream 220603 5201030 ~ 5210826 (+) True nfya
XM_022671050.1 mRNA downstream 65032 5496669 ~ 5513671 (+) True alx3
XM_015601208.2 mRNA downstream 92172 5523809 ~ 5529064 (+) True rbm15
XM_007231938.2 mRNA downstream 187675 5619312 ~ 5627452 (+) False prok1
XM_022670974.1 mRNA downstream 201450 5633087 ~ 5655686 (+) True LOC103025805
XM_022671058.1 mRNA downstream 338379 5770016 ~ 5781687 (+) False LOC111192754
TU66895 other upstream 1185202 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2417799 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2417799 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2417799 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4620164 808155 ~ 811265 (+) True G48714
TU67370 other downstream 187522 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 345415 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 939883 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1552553 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 2775705 8207342 ~ 8221162 (+) True G50568

Expression Profile