RNA id: TU67368


Basic Information

Item Value
RNA id TU67368
length 598
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G49868
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5606003 ~ 5606600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtctgaccaaaaaaaaagagagaatattCTCACATGGTTTGCTGTGATTCATTTTGATAGGCTCAGATTTTTcccagtgtgaaaacaaaccaaacaatccAAGTTTACAAACTCGTTAATTAATTCACACCAGAGCAAACCTGttgtacactttttaaaatgagtactgtaagattttgtggggaaacactgcacaaattctgcattttatttggaaatcaagggagcagagtctggaggaagagtggagagacacacagtccaatctgcttgaggtctagtgtgaagtttcaaccaatcagtgatggtttggagagacatgccatctgctggtgttgatcctctgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatgctttcccactgctgacaacttttatggagatgcggatttcattttccagcaggagttggcacactgcccacactgccaaaagtcttatataatattctaattttctgagacactgatttttgggtttttccaCTGGCTCTAAGCCATACTCATTAACAATGTGCAAAACTATTCACTGAGTAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650135.1 lncRNA upstream 67090 5537015 ~ 5538913 (+) True LOC111192752
TU67352 lncRNA upstream 68373 5529806 ~ 5537630 (+) False LOC111192752
TU67354 lncRNA upstream 90144 5515561 ~ 5515859 (+) True G49855
TU67336 lncRNA upstream 163318 5442409 ~ 5442685 (+) True G49838
TU67335 lncRNA upstream 174366 5431429 ~ 5431637 (+) True G49837
TU67409 lncRNA downstream 59339 5665939 ~ 5666658 (+) True G49901
TU67435 lncRNA downstream 99099 5705699 ~ 5718260 (+) True G49915
TU67469 lncRNA downstream 212363 5818963 ~ 5819283 (+) True G49941
TU67470 lncRNA downstream 218015 5824615 ~ 5825171 (+) True G49942
TU67513 lncRNA downstream 320805 5927405 ~ 5930023 (+) True G49980
XM_015601208.2 mRNA upstream 76939 5523809 ~ 5529064 (+) True rbm15
XM_022671050.1 mRNA upstream 92332 5496669 ~ 5513671 (+) True alx3
XM_007232973.3 mRNA upstream 287555 5274656 ~ 5318448 (+) True kcnc4
XM_022671045.1 mRNA upstream 334998 5266678 ~ 5271005 (+) True LOC103043955
XM_022671047.1 mRNA upstream 347388 5213404 ~ 5258615 (+) False ahcyl1
XM_007231938.2 mRNA downstream 12712 5619312 ~ 5627452 (+) False prok1
XM_022670974.1 mRNA downstream 26487 5633087 ~ 5655686 (+) True LOC103025805
XM_022671058.1 mRNA downstream 163416 5770016 ~ 5781687 (+) False LOC111192754
XM_022671057.1 mRNA downstream 163424 5770024 ~ 5781687 (+) False LOC111192754
XM_022671056.1 mRNA downstream 163424 5770024 ~ 5776674 (+) True LOC111192754
TU66895 other upstream 1359776 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2592373 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2592373 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2592373 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4794738 808155 ~ 811265 (+) True G48714
TU67370 other downstream 12559 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 170452 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 764920 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1377590 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 2600742 8207342 ~ 8221162 (+) True G50568

Expression Profile