RNA id: TU67470


Basic Information

Item Value
RNA id TU67470
length 557
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G49942
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5824615 ~ 5825171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGGAATGAAATatgagtaacaaggctatttttttaaaggtcaccttccgcgaaaatccgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctctgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcgcaGAGCGGTGgcaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcacttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67469 lncRNA upstream 5332 5818963 ~ 5819283 (+) True G49941
TU67435 lncRNA upstream 106355 5705699 ~ 5718260 (+) True G49915
TU67409 lncRNA upstream 157957 5665939 ~ 5666658 (+) True G49901
TU67368 lncRNA upstream 218015 5606003 ~ 5606600 (+) True G49868
XR_002650135.1 lncRNA upstream 285702 5537015 ~ 5538913 (+) True LOC111192752
TU67513 lncRNA downstream 102234 5927405 ~ 5930023 (+) True G49980
TU67515 lncRNA downstream 103305 5928476 ~ 5929255 (+) True G49982
TU67555 lncRNA downstream 322279 6147450 ~ 6148423 (+) True G50009
TU67556 lncRNA downstream 322566 6147737 ~ 6148423 (+) False G50009
TU67563 lncRNA downstream 327406 6152577 ~ 6155022 (+) True G50012
XM_022671055.1 mRNA upstream 35350 5781777 ~ 5789265 (+) False LOC103023397
XM_022671058.1 mRNA upstream 42928 5770016 ~ 5781687 (+) False LOC111192754
XM_022671057.1 mRNA upstream 42928 5770024 ~ 5781687 (+) False LOC111192754
XM_022671056.1 mRNA upstream 47941 5770024 ~ 5776674 (+) True LOC111192754
XM_022670974.1 mRNA upstream 168929 5633087 ~ 5655686 (+) True LOC103025805
XM_007231928.3 mRNA downstream 66480 5891651 ~ 5912340 (+) True LOC103022582
XM_007231929.3 mRNA downstream 94003 5919174 ~ 5927170 (+) True dclre1b
XM_007231925.3 mRNA downstream 421058 6246229 ~ 6250603 (+) True lhfpl5
XM_007231924.3 mRNA downstream 421058 6246229 ~ 6249169 (+) False lhfpl5
XM_007231918.3 mRNA downstream 524971 6350142 ~ 6354308 (+) True LOC103046376
TU67445 other upstream 35882 5777052 ~ 5788733 (+) True LOC103023397
TU67370 other upstream 197163 5619159 ~ 5627452 (+) True prok1
TU66895 other upstream 1578388 4244528 ~ 4246227 (+) True G49475
TU66505 other upstream 2810985 2982924 ~ 3013630 (+) False faf1
TU67633 other downstream 546349 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1159019 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 2382171 8207342 ~ 8221162 (+) True G50568
TU68306 other downstream 2445077 8270248 ~ 8278756 (+) True G50563
TU68335 other downstream 2517769 8342940 ~ 8344514 (+) True G50583

Expression Profile