RNA id: TCONS_00002869


Basic Information

Item Value
RNA id TCONS_00002869
length 831
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_000582
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46247618 ~ 46248591 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttctatttgtgttttctactatggaagtcaataaatacaagtttccagctttcctcaaagtatcttttgtgttcaatagaagaatctcataaaggtttggagggTGAATACTGTAAAtgctgagtaaattttcatttttgggtgaactacccccttTAATTGTCTGTTAATTGTCTGCACCGTCTTTctccaacacacaaacacacacgcacacacacacacactcagcgtcAGACAGTCATGTGGGATGTTCAAGGAGCTGTGAGTGCTATCCTGTTTACACTCTCTGGGAGGGGACCCCGAGCACCTGTTTTGTCTTGCGGGGCAGCCACCGCGAAGTCATCCACAAAAGAGAGACGAACATCTGCTGGAGGTTGTCCGATGTTGCCAACAGCACCATGCAGGCCAGGTGCAGATTTTACTGAGAGAGAGCTCATTTTAGGGGAAAGAGGCACACGGCGGCGCCCTCTCAGGGCAAACATCCCTGCTCTGTCACCTGGTTCTTTGTGCCGCAGCAGCTGAGCGTGCAGGATCCACAGCTGCTTCCAGCTCCAGTCCCCGTCTTCTGTTTGTTTTCCCTCCAAAACCACTCACCTGCTTTAAGTTGCTCACCTCAGGGCCTGTTCGTAACGGAAACCATCATTTGATCAGTAAACATCTCTTCTGCTCACCATATGCTGCATGACAACATCAGCAAATACATTCTAGCCGTGGAAAATGTTAATTGATATTAATTAGCTTTATGAAGACGTTAAAAATCATCTTTTTAAGATCTTTGAGCATcctaatttgtttatatatttttttttattttctacgtTGAATccatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002868 lncRNA upstream 28457 46217503 ~ 46219161 (+) True XLOC_000581
TCONS_00001009 lncRNA upstream 94418 46039237 ~ 46153200 (+) False XLOC_000579
TCONS_00001010 lncRNA upstream 94418 46053427 ~ 46153200 (+) True XLOC_000579
TCONS_00003129 lncRNA upstream 94775 46032751 ~ 46152843 (+) False XLOC_000579
TCONS_00003130 lncRNA upstream 194019 46038894 ~ 46053599 (+) False XLOC_000579
TCONS_00001012 lncRNA downstream 1388 46249979 ~ 46251824 (+) True XLOC_000583
TCONS_00003131 lncRNA downstream 14860 46263451 ~ 46272326 (+) True XLOC_000584
TCONS_00002870 lncRNA downstream 58424 46307015 ~ 46307550 (+) True XLOC_000585
TCONS_00003133 lncRNA downstream 470505 46719096 ~ 46726957 (+) False XLOC_000591
TCONS_00003132 lncRNA downstream 470505 46719096 ~ 46726957 (+) False XLOC_000591
TCONS_00001011 mRNA upstream 51511 46194333 ~ 46196107 (+) True XLOC_000580
TCONS_00001008 mRNA upstream 217041 46026457 ~ 46030577 (+) True XLOC_000578
TCONS_00001006 mRNA upstream 226893 45958904 ~ 46020725 (+) False XLOC_000577
TCONS_00001007 mRNA upstream 226908 45969240 ~ 46020710 (+) True XLOC_000577
TCONS_00001005 mRNA upstream 311612 45925365 ~ 45936006 (+) False XLOC_000577
TCONS_00001014 mRNA downstream 156377 46404968 ~ 46452686 (+) False XLOC_000587
TCONS_00001015 mRNA downstream 156703 46405294 ~ 46450270 (+) True XLOC_000587
TCONS_00001016 mRNA downstream 245353 46493944 ~ 46594288 (+) False XLOC_000588
TCONS_00001017 mRNA downstream 260585 46509176 ~ 46593899 (+) False XLOC_000588
TCONS_00001018 mRNA downstream 331294 46579885 ~ 46590637 (+) False XLOC_000588
TCONS_00000997 other upstream 479088 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00000982 other upstream 1076966 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 1238002 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000971 other upstream 1249848 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000970 other upstream 1258072 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00001013 other downstream 152021 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00001019 other downstream 333876 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001025 other downstream 840910 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001027 other downstream 847234 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001046 other downstream 1648678 47897269 ~ 47897385 (+) True XLOC_000608

Expression Profile

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