RNA id: TU67633


Basic Information

Item Value
RNA id TU67633
length 377
RNA type TUCP
GC content 0.51
exon number 2
gene id G50063
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6371520 ~ 6376705 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aCTGAAGTGAGGATGGACGGAAGTGATGACGGATCTGGCAGTGAGCCAGACTCGTTTGGTTGTAGGAGCGGGAATAGGGCCGGTGAGGGAGGAGAATGGCAGGTTGTGCGGTCTAAGAAGAGCAGACGTTTGTCTGAGGATAGAGATTCTAGTGGCAGTGGAGTGCGTGGAGAGACTGTGAAGCGTCGTAAGGAGGAATACCTCATTTTGATCCAGTTTGAATCTGAATCTGCTGGCGTGCTGAATCCGGTCAGGTTGACATCTGAAATTAAATCAGCTCTAGGGGATGTGGCCGGAGCTAAGGTGTTGAGAGGAGGTGGCGGTAATGCACCTTCAGTTGGTCTGCCATCCGCCATAAacctgaaagaagaagaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67616 lncRNA upstream 75171 6287836 ~ 6296349 (+) True G50051
TU67615 lncRNA upstream 76272 6292421 ~ 6295248 (+) True G50050
TU67597 lncRNA upstream 90590 6265929 ~ 6280930 (+) True G50036
TU67583 lncRNA upstream 119639 6179792 ~ 6251881 (+) False G50025
TU67584 lncRNA upstream 119639 6180782 ~ 6251881 (+) True G50025
TU67643 lncRNA downstream 42079 6418784 ~ 6423352 (+) True G50071
TU67646 lncRNA downstream 42079 6418784 ~ 6423352 (+) False G50071
TU67673 lncRNA downstream 99870 6476575 ~ 6479992 (+) True G50092
TU67725 lncRNA downstream 121289 6497994 ~ 6499008 (+) True G50135
TU67726 lncRNA downstream 122364 6499069 ~ 6499432 (+) True G50136
XM_007231917.3 mRNA upstream 505 6358495 ~ 6371015 (+) True LOC103046076
XM_007231918.3 mRNA upstream 17212 6350142 ~ 6354308 (+) True LOC103046376
XM_007231925.3 mRNA upstream 120917 6246229 ~ 6250603 (+) True lhfpl5
XM_007231924.3 mRNA upstream 122351 6246229 ~ 6249169 (+) False lhfpl5
XM_007231929.3 mRNA upstream 444350 5919174 ~ 5927170 (+) True dclre1b
XM_022671060.1 mRNA downstream 16119 6392824 ~ 6400833 (+) True LOC103037089
XM_007231907.3 mRNA downstream 84838 6461543 ~ 6472088 (+) True LOC103043236
XM_007231901.3 mRNA downstream 169864 6546569 ~ 6587345 (+) True LOC103041483
XM_007231900.3 mRNA downstream 213586 6590291 ~ 6601742 (+) True was
XM_007231898.3 mRNA downstream 371694 6748399 ~ 6771061 (+) True LOC103040567
TU67445 other upstream 582787 5777052 ~ 5788733 (+) True LOC103023397
TU67370 other upstream 744068 5619159 ~ 5627452 (+) True prok1
TU66895 other upstream 2125293 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 3357890 2982846 ~ 3013630 (+) False faf1
trnae-cuc other downstream 607485 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 1830637 8207342 ~ 8221162 (+) True G50568
TU68306 other downstream 1893543 8270248 ~ 8278756 (+) True G50563
TU68335 other downstream 1966235 8342940 ~ 8344514 (+) True G50583
TU68705 other downstream 3266669 9643374 ~ 9782721 (+) True G50889

Expression Profile