RNA id: TU67798


Basic Information

Item Value
RNA id TU67798
length 302
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G50188
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6773399 ~ 6776899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctagcaactgcttagcaaccactttagaaatgatagcaactgcctagcaaccagttagctacactTTAGccaccacttggaaaacgttagcaactgcttagcaaccacctagcaaccacttagcaaccatgtggaatatgttagcaactgcctagcaactgcttagcaacacctaagcaaccacctggaaaacgttagcaactgcctagcaaacgcttagcaaccactttagaaatgatcacaactgcctagcaaccacttagcaaccattttaactttACAACGTTATTAGcgtacttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67768 lncRNA upstream 44094 6697103 ~ 6730556 (+) True G50172
TU67729 lncRNA upstream 270319 6500149 ~ 6504331 (+) True G50138
TU67726 lncRNA upstream 275218 6499069 ~ 6499432 (+) True G50136
TU67725 lncRNA upstream 275642 6497994 ~ 6499008 (+) True G50135
TU67673 lncRNA upstream 294658 6476575 ~ 6479992 (+) True G50092
TU67806 lncRNA downstream 7304 6782888 ~ 6788203 (+) True G50195
TU67810 lncRNA downstream 13288 6788872 ~ 6791697 (+) True G50197
TU67830 lncRNA downstream 114382 6889966 ~ 6939844 (+) False LOC103039117
TU67844 lncRNA downstream 209952 6985536 ~ 6996194 (+) True G50224
TU67848 lncRNA downstream 227505 7003089 ~ 7082346 (+) True G50227
XM_007231898.3 mRNA upstream 3589 6748399 ~ 6771061 (+) True LOC103040567
XM_007231900.3 mRNA upstream 172908 6590291 ~ 6601742 (+) True was
XM_007231901.3 mRNA upstream 187305 6546569 ~ 6587345 (+) True LOC103041483
XM_007231907.3 mRNA upstream 302562 6461543 ~ 6472088 (+) True LOC103043236
XM_022671060.1 mRNA upstream 373817 6392824 ~ 6400833 (+) True LOC103037089
XM_007231894.3 mRNA downstream 23070 6798654 ~ 6800365 (+) True c6h6orf226
XM_007231893.3 mRNA downstream 87772 6863356 ~ 6941978 (+) True LOC103039117
XM_022670977.1 mRNA downstream 166106 6941690 ~ 6960632 (+) True LOC103035560
XM_022670978.1 mRNA downstream 251065 7026649 ~ 7039636 (+) True LOC103037743
XM_007231965.3 mRNA downstream 348264 7123848 ~ 7130581 (+) True LOC103034603
TU67633 other upstream 397945 6371520 ~ 6376705 (+) True G50063
TU67445 other upstream 985917 5777052 ~ 5788733 (+) True LOC103023397
TU67370 other upstream 1147198 5619159 ~ 5627452 (+) True prok1
TU66895 other upstream 2528423 4244528 ~ 4246227 (+) True G49475
TU66506 other upstream 3761020 2982924 ~ 3013630 (+) False faf1
trnae-cuc other downstream 208606 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 1431758 8207342 ~ 8221162 (+) True G50568
TU68306 other downstream 1494664 8270248 ~ 8278756 (+) True G50563
TU68335 other downstream 1567356 8342940 ~ 8344514 (+) True G50583
TU68705 other downstream 2867790 9643374 ~ 9782721 (+) True G50889

Expression Profile