RNA id: TU67882


Basic Information

Item Value
RNA id TU67882
length 2844
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G50258
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7077233 ~ 7080141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttatttacatttttagagtGTCATATGAAAGGAATGCATATATACACAATGTGAAACAATTTAAGTGGGGCGTTGGGACATGTCCTCAGGGTGAAAGTCAGTACAgatgtacattttttaatatttttgaaagTAAAAAGCCTGAGATGTACTTTTAGAcagattattacattatattcacACATTTCTTACAGTAAAAACACTTGCTTTTAGGGATGTCCCGGTCCAATCCAGGTATATTTTAAAGGGTTGTGTATTGACTACTTTAATTCCAGTCCAGTTTTAAAGCTATATTACATCCACAGTGTTAAGAGAGTCATCTGGTGTCCTCAAAGTGCCATTAACAGAAATTACTGCCCAGCCGGCGGCACTGAGGAGAGTATTCAGAGGGTAAATTAATGAGTTTAGTTAGAGACTGCAGCAtggaaatattttacattggAGCAATGAAACGTAACATAATatctgaaaatatataaaactttcACCTAAACACTCTTTTTTACTGTCAGGAAGACTACACACAATTCTTTGTTTTAATCCACCACTGAATAGTACATTTATAAGCGAGTGGAGGTTAACACTGATGCTAATATACACACATTCTATAGAACTCCCAAATCATAGCACACTCACTTCACTATATAACAGTTATTTCATATCAGTCCACAGAATGTTTGATTATATGAacttttactaaacataaagtgattttatttcaccACCACATTTATGGAAGCTCAGCATTAAGAGTCTCTAATTGAATTGGACAAAATAACCTGCTTGTCTCAGGACATCCCTACTTGTAGTACTTGTAGTATAGTATTATAACCATTACACAATGCATTTTTTACAGATCTGGTTTTAATTGTCTTTAGCATGACTTGGCTTTGAAAGGAATTCAAAAAGAAGGAAGtggcttttaaaaagccattatgAAGCAGTGAATGTTCAGTATGCATGGTGTGACCATACCCATTATGTAATGTTGAATTCCTATAATGTTCCCATGTCACAAAAGTGAAAAATGGCCTGTAACATATGTACATTATAAAGTCTCCAAACTGGTTTTTGGGTGTGTGGTAACAGAAAAACACGAACTAATCTAATAAGCTTTGCATTATGAGGAGGTTTGtcaaatttttaaaaagattctgcacattaatacacttaatattaatacaaaaatgttttaaaacccaGAGAGGTTCTTCTATGGAAGCACTCCACAGAAGCCTTTATTTTTtgcacctttattttatttttttatttaagagtgTATTAACTTCCTGCACTGTGTGTAGCCAtgtttaataaactcatttagcCCAATCTAATCCAAAGCATTCATACAGCGACAGCCTCCGAACAATGGAAGCCCTGCCCTAATGAGCTTGTTTGCACTGCCGCTTTCTTCCATTGTGCTCTAATACACTATAAACCTGACATTATCTGGTCGGATGTGGTGCCTCTGCCAGGCAAGCCTGGGCTTGTGCTTCATTTTTGGACGATTGCGCTCTATGTAGTCTGTCATCTCCTTCCATCCGCCTCCCAACTGACACTTGTCTCTCTGGGGGTTTCTGCACTTGTACACTGGGTTCTTGTGTGAAGTGTCAAAACACATACCGACAGTTCTTTGTGGCCAAAAGAAAAGTACTTGTTGACGTGGCACGGAAAAAACAACAGTCATTATTTCTTTAAAGGAAGCTGGCTCCAACTGGCTAGGATGAAAATGTGGGTGTAAGAAACGTCAATAACATATTGTATCGCAATAGTTTTTGTTCTGCAATACTgtatcagtttttaaaaacacggtattgatttataaatattaatttacagttgtaaagattggtgtcagaagtggtacATTCAGGGCAGTGTTGTACAGTGTTGTTacatcccactgttctgattagataaaaagtttatttttttgtttttataatattatctCAAATTTTCATAcccttttttccccaatttacacagccaattaccgaTCCCATTCACcaggactccccttatcactagtgatgccccaacacaaggaagacagacacatgtgaagtcagccaatgcctctttttgagctgctgctgctgcagcattgccaagtagcatcacagcgcactcagagggaagggcagcaactcggttctgatacatcagctcacagatgcctcttgctgagcgacatcaccctttggagcgatgtggggagagagcgccatgtacccatccagagagagccggtgatTTCCTGAACATAGAGACAGCACTTACCCTGCTGGACCATATGGAGCCCCAGATTTTATGAATttgatagtgtttttttttttctcaaatttgaTTGCAAAAATTGcttacagtattgtgatatattatgttatatgtattgtgaaacacattaacatatcGCCAAATTCTTCCCAATACACACAGCCCTACATGAATACTCCTGCCTCCCAGCTCTGCCGGTTAGAGTGCTGGATCCTTGTTCCTCACAGGGAGgctacattatacattatagaaTAGGGCACAACACAGAGAGCAAGGGGAGATTCAGGTTAGAGTCTTTGTTATTCTGCCTGCTGTTACAGATTCAGTGTTTTCTTCTCCGCTGTTCCTCTTGGTTTGAGATGGAGAAGGAGGTTGAGCTGCTAAAGCTGAAAGCTTACGCTGGTGCCTCCCCCGGTGGCCTGTGACAGTCTAAATCCAGAGGTCTCTCACTGCAGCCTCTTCGCTTCTTCCCCACATGCCTGGATGCCCTCTCGCAGCGCACTGAGCCTGGGAGAGGTGCCCACGCATGGCTGGGGCTATGACAGGTTCCTGAAAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67877 lncRNA upstream 4747 7066875 ~ 7072486 (+) True G50253
TU67844 lncRNA upstream 81039 6985536 ~ 6996194 (+) True G50224
TU67830 lncRNA upstream 137389 6889966 ~ 6939844 (+) False LOC103039117
TU67810 lncRNA upstream 285536 6788872 ~ 6791697 (+) True G50197
TU67806 lncRNA upstream 289030 6782888 ~ 6788203 (+) True G50195
TU68103 lncRNA downstream 800745 7880886 ~ 7884058 (+) False c6h9orf3
TU68105 lncRNA downstream 800745 7880886 ~ 7884058 (+) False c6h9orf3
TU68124 lncRNA downstream 859460 7939601 ~ 7942527 (+) True G50439
TU68123 lncRNA downstream 859828 7939969 ~ 7942748 (+) False G50439
TU68263 lncRNA downstream 965560 8045701 ~ 8046053 (+) True G50535
XM_022670978.1 mRNA upstream 37597 7026649 ~ 7039636 (+) True LOC103037743
XM_022670977.1 mRNA upstream 116601 6941690 ~ 6960632 (+) True LOC103035560
XM_007231893.3 mRNA upstream 135255 6863356 ~ 6941978 (+) True LOC103039117
XM_007231894.3 mRNA upstream 276868 6798654 ~ 6800365 (+) True c6h6orf226
XM_007231898.3 mRNA upstream 306172 6748399 ~ 6771061 (+) True LOC103040567
XM_007231965.3 mRNA downstream 43707 7123848 ~ 7130581 (+) True LOC103034603
XM_022671072.1 mRNA downstream 161984 7242125 ~ 7333972 (+) False LOC103033640
XM_022671070.1 mRNA downstream 161993 7242134 ~ 7336833 (+) True LOC103033640
XM_022671071.1 mRNA downstream 161993 7242134 ~ 7336833 (+) False LOC103033640
XM_022671069.1 mRNA downstream 270528 7350669 ~ 7485744 (+) True LOC103033322
trnae-cuc other upstream 92972 6984190 ~ 6984261 (+) True trnae-cuc
TU67633 other upstream 700528 6371520 ~ 6376705 (+) True G50063
TU67445 other upstream 1288500 5777052 ~ 5788733 (+) True LOC103023397
TU67370 other upstream 1449781 5619159 ~ 5627452 (+) True prok1
TU66895 other upstream 2831006 4244528 ~ 4246227 (+) True G49475
TU68311 other downstream 1127201 8207342 ~ 8221162 (+) True G50568
TU68306 other downstream 1190107 8270248 ~ 8278756 (+) True G50563
TU68335 other downstream 1262799 8342940 ~ 8344514 (+) True G50583
TU68705 other downstream 2563233 9643374 ~ 9782721 (+) True G50889
XR_002650141.1 other downstream 3043579 10123720 ~ 10130801 (+) False nfu1

Expression Profile