RNA id: TU68622



Basic Information


Item Value
RNA id TU68622
length 1178
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id G50841
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9309260 ~ 9324163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


gAAAAGGAGGAAACTCACATGCACTGATTAAAATAacagcatttttaacagcatttgtgtaagaaaagaagataaattatatataaaatactctgattacatacagtataataccagtaatataatttaagcaTATACAGAGTCATTTAGACATTTCAACATACTTGAGTATATCTTTAAGTCTGATGTACAAAGCGCTATAAAGATATGATCTTTCAAATACTGTAGCAGCCAAATTGTAAGGGCACACTTTCAGAGAGGGCAAAGGAATGTAATAAATACTTCATTTccatagagaaaaaaaaaaaaagacacataaaGAACATTCCAAAACCAGGAGCAACACAAGAAATCACACAGTACCTTCATAGCGTCTGAAGTAACTAGACATTTTACTTGGAGTTTCGACGTACGCCTCTCTGTCCATCCCTGACCGGGAGCTTTACAACTGCTATTTGAAAGAGGGCAAGTTTGGCACTTTTATGCTGATGTCTCCGATGTTGATGTTCTTGGGCATTTCTGGAAGGTTCATGTTCTTTACTGCCGATACAGCACGTGCAGGAGCCCCTGCTATGCCAgcCTCCGACTTCTCCATTTTGTTTTGGGCATCTACTTGTGTAATGATCTCGTTCATGTTGGTCTCTAGAACCATACCACCCATCACCATCTCAGCCAGGATATTGTGAACCTTGTCTACATGGAAAATTAGGTCAAGCTCACAGACATTCTCAAAACATTTGTCCAATGTTTCCACAAACAcCTGGATTAAATCTAGAATGCCAAGTTCACTTTCTGAGGAGTCTACACAGAAGACAAAGTACAATGTGGCATAGTGTCTGTAGATCAGCTTGTTGTCTGATCCACCGATCAACATTCCACCCTCCAGGAAATTGCAGACGTTCTCGTCTCGCTTTGAAACCAGATGAAACGTTTCCCTAATGATCTGCTGTTCTGTGTCTTCAGTATAGTGTTCGTAGAATTTGGAGAGCCTGGGTTTTCCATGGTTGTTGAATATCAGTATGGCTTTTATCATGTTATTATCCTGTCAGGCCGTGTATTAAACCGACAGACTGAGGTACGGACGTCGTTCTGTCACCTGTGTGTTCCAGTGTACCTGAGTGAAACTAGAGCCACTCAGTGGCAGTCTGGCAGCACGGCGGAGGGATACGTAGCAGACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU68599 lncRNA upstream 55134 9253173 ~ 9254126 (+) True G50822
TU68595 lncRNA upstream 105043 9204016 ~ 9204217 (+) True G50818
XR_002650140.1 lncRNA upstream 302614 9004992 ~ 9006646 (+) True LOC107197475
TU68536 lncRNA upstream 362888 8945273 ~ 8946372 (+) True G50770
TU68418 lncRNA upstream 553251 8755645 ~ 8756009 (+) True G50656
TU68702 lncRNA downstream 290365 9614528 ~ 9622057 (+) True G50886
TU68703 lncRNA downstream 290440 9614603 ~ 9617381 (+) True G50887
TU68721 lncRNA downstream 397182 9721345 ~ 9728225 (+) False G50901
TU68719 lncRNA downstream 402375 9726538 ~ 9727985 (+) False G50901
TU68720 lncRNA downstream 402375 9726538 ~ 9733234 (+) True G50901
XM_022670979.1 mRNA upstream 106131 9085038 ~ 9203129 (+) True sema6a
XM_022671109.1 mRNA upstream 313508 8976218 ~ 8995752 (+) True hsd17b4
XM_007231611.3 mRNA upstream 1039926 8264164 ~ 8269334 (+) True LOC103034488
XM_007231613.2 mRNA upstream 1046530 8259603 ~ 8262730 (+) True LOC103035131
XM_007231610.3 mRNA upstream 1051308 8254568 ~ 8257952 (+) True LOC103034161
XM_007260785.2 mRNA downstream 2537 9326700 ~ 9335342 (+) True cdo1
XM_007260786.3 mRNA downstream 21475 9345638 ~ 9351678 (+) True tmed7
XM_007260806.3 mRNA downstream 28910 9353073 ~ 9354864 (+) True catsper3
XM_007260788.3 mRNA downstream 33604 9357767 ~ 9364491 (+) True fem1c
XM_007260790.3 mRNA downstream 54963 9379126 ~ 9385691 (+) True ccdc112
TU68335 other upstream 964746 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 1030504 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 1088098 8207342 ~ 8221162 (+) True G50568
trnae-cuc other upstream 2324999 6984190 ~ 6984261 (+) True trnae-cuc
TU67633 other upstream 2932555 6371520 ~ 6376705 (+) True G50063
TU68705 other downstream 319211 9643374 ~ 9782721 (+) True G50889
XR_002650141.1 other downstream 799557 10123720 ~ 10130801 (+) False nfu1
TU69382 other downstream 2508518 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 3113242 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 3113243 12437406 ~ 12448516 (+) True znf692

Expression Profile


TU68622 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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TU68622 Expression in each Bioproject

Bar chart with 5 bars.
TU68622 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047515 False 1009 mRNA 0.41 6 NC_007136.7 10793478 ~ 10803532 (+)
grasscarp (Ctenopharyngodon idella) CI01000153_00156999_00163735.mRNA True 1913 mRNA 0.36 5 CI01000153 156110 ~ 164234 (-)
bowfin (Amia calva) AMCG00010513 True 493 mRNA 0.42 5 CM030129.1 33040995 ~ 33057801 (+)