RNA id: TU68897


Basic Information

Item Value
RNA id TU68897
length 1730
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G51051
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 10184552 ~ 10186281 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAAACACAAGTAAAAAGCAAAGTAGCCAAAAGATGCCTGCTGTCCTAATCCGGTTGAGACAGTGATTTGTCTAAGATTCCTTTCAATCTGCCAGCATGGAAAACTGCTGATGTAGCATGAAGAACAGGCAGTACATGTCATACAGATGCTGTCTTGGCACATAATAACTTAGGAGTTGAATATGCTGAAAacgctaaaaaaaacacaagaacaaAGGATTATTACACATTATGTCAAACTGTGAAGTGATTTATATACAACAGgtacataaaaaacaaacaaacacgcaCTTCTGGCAattttattagcccttggccagaACACGTTTTTGTTGGCAAGCAAACAGCTACTCATAATCGTCTCTTGCAGATATTCTAGGTCAGTGTTCTCtaggggtgtaacagtacaCGTATTTGTACCAGATCGTAATGGTTTTGTGCACACAGTTGTATTGAGTCGTACGATACGTGAAAAGCTATAGATGAAGTGTCCACATTGTGAATGAGGTCAATGAATGTAACGCAGAACCAAATTTTACAAGTGAGAGTTCCTTTCAGGAGCCTTAATGCTGTAATATGATTGCAAGTAATACTGCATTCCATTTAAACTCAGATGTCAGAATTTCTGAGTTCCAAGTTAAAAACTTTTATAAACACTTCCAACTCTTTGTGTATCATTTTGTGTATTATGTGTACCTATTTTGGTTTGATTAAGTGAagtgttttaaacagtgttCAATTCTTGGAATGTTTAAAGgagaaatggacttggggtgaaACAGGTACAACTTAAACAAATAGGTGGGAcaggggaacagattgcaaaattaatttagtggaaatgcatgaattctagctgttacagaaaatatatctataatatttatgcatttccacagaattaattttgcaatctgctcCCCTATTTTTAGATGTGtgcataaacagtgtttttaataataaactatgtgtgcactttcaaagctctCAGTGCCTCATTTCAAATATTAGGGcgctcagaattctaccaatgaaagatggagctactttgagcttgttaatggtgtaaaaatagcaattaCTTTGCATGGAAAGCTCTATGCCCCCATTGCTTGCATTGTAAGTCTGTTGGGTCCGTTTCataccagatttctcctttaagtggaATGCTGTCAATTTTGATGTAATGTGAGTCCCAGCTCCAGCATTTAACTTCTGAGAAAAATGGAACGTAGTACAAACTATGTATTTGAATCGCACTGTGGGGCTTTTGTTGACTTTCTATTTTCTTTAGTTCCTCATATTTGTTAATCTTTTTAaggacctggcgtccacatgtggACGTTACATTTTGTGTTGTCTAGACCACAAAACAAAATTTTGCTCgacaagggcctggtgtcctcttatcAGGCTATTATACTGTCACCAAGTGGTGACAGAAGAGTTTAACATGTTACAGTTTCGAATTTattcagaaatttaaatgaacagtaaatatagtaaacgtttagtaaatgttttttcctttgTAATTTTTTcgtgttgaagcagcactttAAATAAGAGGGGCACAATTGTtatttctacttttgttttgcactcagGAAAAAAATGCTGCTGCACATCATTACTGATTACGACTTTGTTGTGTTCTATTGAAATAATGTGTGGACATAATTTTTCtaagaaactacatcatgtaaaaaaagattattttttgttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68894 lncRNA upstream 11555 10172795 ~ 10172997 (+) True G51050
TU68885 lncRNA upstream 66811 10117396 ~ 10117741 (+) True G51044
TU68873 lncRNA upstream 139024 10045251 ~ 10045528 (+) True G51039
TU68792 lncRNA upstream 269325 9914153 ~ 9915227 (+) True G50961
TU68733 lncRNA upstream 380899 9799971 ~ 9803653 (+) True G50907
TU68908 lncRNA downstream 80375 10266656 ~ 10266862 (+) True G51059
TU68909 lncRNA downstream 81080 10267361 ~ 10285215 (+) False G51060
TU68910 lncRNA downstream 96210 10282491 ~ 10285215 (+) True G51060
TU68933 lncRNA downstream 236767 10423048 ~ 10428757 (+) True G51077
TU68952 lncRNA downstream 398192 10584473 ~ 10585274 (+) True G51096
XM_007234760.3 mRNA upstream 17032 10131853 ~ 10167520 (+) True LOC103023534
XM_007234755.3 mRNA upstream 53751 10123720 ~ 10130801 (+) True nfu1
XM_015601700.2 mRNA upstream 68556 10046003 ~ 10115996 (+) False LOC103021556
XM_022671122.1 mRNA downstream 118140 10304421 ~ 10333429 (+) True kansl3
XM_022671123.1 mRNA downstream 118140 10304421 ~ 10333429 (+) False kansl3
XM_007234762.3 mRNA downstream 118140 10304421 ~ 10333429 (+) False kansl3
XM_015601709.2 mRNA downstream 118140 10304421 ~ 10333429 (+) False kansl3
XM_007234765.3 mRNA downstream 164820 10351101 ~ 10418581 (+) True LOC103024888
XR_002650141.1 other upstream 53751 10123720 ~ 10130801 (+) False nfu1
TU68705 other upstream 401831 9643374 ~ 9782721 (+) True G50889
TU68335 other upstream 1840038 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 1905796 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 1963390 8207342 ~ 8221162 (+) True G50568
TU69382 other downstream 1646400 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 2251124 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 2251125 12437406 ~ 12448516 (+) True znf692
TU69789 other downstream 3129458 13315739 ~ 13327325 (+) False G51743
TU69793 other downstream 3170444 13356725 ~ 13368274 (+) True G51745

Expression Profile