RNA id: TU69223


Basic Information

Item Value
RNA id TU69223
length 5971
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G51307
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11308359 ~ 11315521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctccaGTGTTACAAACTGTAGCAGCATTTTCACAAATCAATCAACATTTTGCTTCTACATTGTGTTCTCCGTTGTAAAGTATCTTTAGTACTCTAGATggcactgtgtgtttaatgttcCTTCTGGTATTGTGCGCAGAGAAAGCAGCTGTATCTAATGTTTGGAAATCTCTTCAGTGGTGGGGACTATGGTTCAGTTGCTAATAGGAACGAAACTGGTACAGAAAGACATTAATGTGTACTTTCCTACAGAAAATATCGTAGTTAGTAGTAGTGGTGTTTAACACAAGAAAGAGAAGAGCCAAAGAGAATCACAATGATTAAACATGGGTTAGTCAACACATGCCGCTGACTAGCCTAAAGCAATCTGACAGcagatataatataaaagtgatAAACGTGTAGAGCAAGAAATAATTAGGGTTTGTGCAGttattacaataaattataCAGCCATTCTTAGGCATAATCCTCCAGGCATACCCATGTTATATGGGCTAAAAAGCAGCTGTATAGCTAAAAGCAGATGTATGGCTTCATGGCCACTATACATTTAGCTAAATGCAAgtccacaaacaaacacacacacaaaaagcaaTTTCAGGTTCCCTATATAAGGGACTAATGATCAGGACTATTGCAGAGAAACTCACCTAcacaaaaaaaggaagaaagataGATAAAAATGCTAACAATAAATGGAATGGGTGTGATTAGCTGCTAACTAGCATTAGGCAAATTGATTAATGCTAATTAGGTGCTCCTAGTTTCTATTCATTGTAAGACATGTTAGCCATATTAACATACTTGCTTATTCTTCTATTCctttaaatattattacattaaaccTCTCTCGAGTTTCTGAGTgatattttttcatttgttttatttttttaaatatatatataaagctatactatgtgtgtgagtgagcaaTGGACGATCTTTGGGTCTTTGAGTTTAAAGTAATTACGCAACTTCAAAAATGCATTAgcgaataaaaaaataaaccagttAGCGTTTAATCAAaaggcaaacaaacaaagaaatctTGAGGATTCCGGTGgaatttagagaatttagagGAACGTCTAACACTTCCGAGCTGTTTGGGGACAGAAGTCTGAAAAAAAGGGAGGCAAGGAGAACATCAAGTGTAGAACAGAGGAAAGACCCTCTGCAAAACCAGCTAATCAAGTCTCCAGAACATCTTTTCAAAGGAAGGGCATTGCTGCTGGTAATCCTTCGTTATTATGAGATAAAGCTGCAtagatcataaaaaaaatgcatgtttcATGGTGTGCTAAAATATTATAGTACTTCTGACTTGCTACAAGGTCAGTTTCATACATTACTTCCAATCATTGGTCATTACTATACATGTACACATGAACAATATCTCAGAATCTATACATGAATATTAATTAGCAGAATATACAAAAACTCAAAACCTAGGAATCGACCAATATACcagattgcatttttttttaaatcacaaattTATCGCAAAATAAATTTAGCAAATAATATTTGCGCCAATATTTCATCCTCTAATATTTATAACATCTAGCTCTTCATAGTAAATTCAGTGTCAGTGATGGAAATGTCCACAATGGCCATGCCAttacaatagtaaaaaaaaacatgtgagaTGTGTCAAGCTGCAAAATGCATCCGTGCATTAGTTGAGTGAGTCTTTACACACTCTTGATGCCCCACTGGGACCAGCATACACACATGCTCTAAAATAAGAGctaaaaatccaaataaaaatctgaacaacaaacaaaaagcagGTAACGCAGTCACCTCtcattaatataatacaatatgtacaatatatatcACTTCCATAGACTTTATAGTTGTGCGTAATTTCAATGCAAAGCATTCACTGCTCAAAAATGGCAAACTTTTGAGCCAAGTCGACATCCATTACGAATGGAAGAATGAATCTAGATCCAGGATCTAGAGACTCACAGGCTTTGCTCTACAATAAAGACAAAATACTCTTGTTGTCCTGCATATTTTCAAAGAGGTCAAGCGTACCTTATTGTGGAGTGCACTAAAAATATCAGTCaaggcttgtttttttttttaataatcctATGCGCATCAATGCGTAGGTAAATATTCTCTAGGAAGCATCGTTTCAATGTACAGGGCACAGCTACCTAGTTTTTACCTAGGTTGTTCAAATTTGTGGTGCACTTCAGGTGTAAAATGACATTCAACACTCAAGTCACAGGTGTTGCAGCTTTAGGTTTAGGAACGTTATTATGTAGAAGCCTATATAGTCTACATAGATATTTTGAACATGTAGCTGCTAATTTCCAAACCCCCTTATTACTGTAAGCGGGTCACAAGAAGGGAGATCGTCACAATTTATGGAGGTAACAATAGCGCATAAAGTAGCTACTCCCATTTCAATcatttataagatttttttatccAGTGCAAATCATTGTAACTTTTTACAGATATCCTGTAGTATACACACATTACTCCACCTCCCCATTTAAAACTAATCATGACAATGTTAAAGCAAGTCAAACACACCTACATCACATAAACTGGCCAACTGTCAGGAGTTCAAAGTCCAGGACATTTAAGTTTTTATCTTTATGacaaaactatttatttgataaaataaaatgtttgcttCAAGAGAAATGTGGCACATCAGATTTGAATTGACCACTTGTCCACATCTACCACTGTTTTACTATCATCATCAGCACATATATAACTTTCTTAAGGTTTTTTGATTCCTTTTACTACCACCTTTAATTGTAGAAATGCTTCTACAAAGAATCATTCTGAATGGCTTTTTCATCTACACCAATGGATTGTGTAGACAAATtggcaaggccaattgtgctcccataaactccggctgctgatggcaagtaGCTTATAGTGGCAGTTTTATAAATGAGGCCCCATGACTGTTAACCACTGGCCTAGGAAAAACTATGAACAACTTCTTTGGACCCGTCAAATGCATATCTTGGAAGGTATCATATTGGTCCAGAAAATAAACTATAGAAATCTAAGTAAAGGCAGTCAGTCTTCTGCCCATGAAGAGCACTTTTCTCAAAAGCACagttatttctgtatttatcctGCAGCAGAAATGGGGAATGCGTTCTGTTAAATAGTCCGTTATAAATACttacaggaaagaaagagagacctATAGACCCTCTGAAGCGAAAGctgaacaaaaaacataaatagaaatTTCCTACTTTGAGTCTATAAATACAAGGGCAAAGCTAAACACATTGCTGGCTGACTGAGGGGCTGGGAGGATGTGACTTTGCGTCTGATTTTAGGGGCACACCTTCTTCTGGACAATCATTGTGATCACCATCATACACATACCGGTACTCATCCCATTAGACCGTGAATCAGGAATCAGACCCAAGAGTAGAAATATTAGGGCTACGCTCACACAGCAGTACAAAGTGGCTAAAATCAGATCTTTCTCTAGACAAAGATGTGTGGCAGTGTAAAGAATTTGGTTTACTTCAATATGTGGCATTAAAATTTGATACATACCCGATTTGCAGCAATGCAGAACAGCCAGATCAGAATTTACATGACTTTTGGGTTGAACTGGGCTTTCATTGGCGGGGTAGCGAGGTAAGAGAACTCAGAAATATTTGGAATGATGCATTTGCTTCAATAAAATTAGAAGGTTTGTGTTACAATTATTTCAAAAGGAATGAACAGCACAAACTGTACATACAAATGCGAAATGTAAAAACAtcccaaaatacattttatatttaataggaaaATCGAAtctgggccacttttacctgatGTGTGAGCATAGTCTAAAAGACATGAGAAATTAAGTTGAATTTTGTTCTCTTTGTTCTCATTTCCTCTACCTAGAGGGACATTTTTGCATGTGTACActtgcatatatatttatatataaatatgcctaaatatataattttctgcTTGTAACAGCAATAAGTtctttcaataaataaatgttcagCAAAATTTCTACATTCTTCTTTTCCATTTTCTGAATTGTACATAGTGTGTACTGAGAAGATCACAGGGCAAGTTGATGCAGTGTTGGTCTTCAAAAATCTTTTCTGTGTAGAACGGATTCTGTCCTGAGGGTCCTAACTGAAGCCTCAGGAGTGGGCAGTGTCAGCAAACACTAAATTTAACCTCCAGTGGTTCACAGCTCTGTTCCTGGAGAGCACTTGTTCAGAATACATTGGCATTTTTCTGATCTTGAACACAGCCTACTTCAACTTAAGAAAATATTGTTGACCAACCTATTTACATACtgctcaaaaatgtttttatagctCTTATTGCAAGGTTGGACAAGCTTTTTACAGCCAGGCTGCTTTTATACACTAAAAACATTAGTTAGCTAATAGGAAGGCACCAAATATTTAGCTACTGAAATTTTTGGCCAAAAATGGTGATGGTGAAAAAGACCAAACAACgtctaaattattttaagtcattttgcaCTGACACCTGGCTCCCTCTATAGAAAGTATGTTAAGCATAGATAATCAATAAAGAACATTTCATATTATAATAtcattcaattattattattgtagattGTAGAAGCAGGATATTAGTGTTGCGGTTGAGTTGTGccattattagttttattatgtATTCATCTGCTAATTTTTAGATCAACATATTGATGgattttaaatagcaaaaaatggCATCAAGGAGCTGACAAACAGCACAGTATGATAAGCAtggcactgctaaggtaaatgtattgcgctttgtttgtttgtctgctaggaaataaaagaaagtgtttaataaatttttttaaatagtaatttTGTAGttgctttttctttaaaaaaaatgccatttaaTTCATTTGATGGTAAAAAAGTGACAATGAATCAAAAATGGCAAAAGATTAAAGATATTTGGTATTtgttaaatgtttcattttaatcGGTTTTGgccaacaaaaaatatttggtgcatccctaatagctaacaatgctaactttcCATAAACCTTGATTACACAACAGAAGTCAAAAAGTATTTGTTATTCCAAATAAgtagaataatgttttttttttttcgcaaacAGGGATTAAATCTAGTTCTGGACTAAAACCCATTTTCAATGGAGcttttccattgaaaggaaaatatagtctacgACTAAGCCTAATACCTTTCCAGGAAACTGAACCATAGCGGACTAAGTTCGCCTGATCCATAAAGTTTAACGCGATTTTGACGTAAACACTTAAAAGTTTATCCAACCTTGCAAATGCATTTGTAGACAGGACATAAATCAGTAGGTCAATTAGCTGTTTTGTTTAACCAGGGAAAATGCCAAACTTTGCAAACAGCAGGTTCCTCCAGGTCCAGCATCAGAAACCACTACTCATAGCCCTATGTTGGTCCCGTCTTGTTCGCCTCCTTCGACAGTTCCAGGTTGTGCTGCTCCTTTTGGGTCAGAAAGTACTTGAAGAACTCGTAGACTGACCACGCAATAGCCGTGGAGGGCATCTGGTAGATAACCCTCGCCCTCACACCCTTGAAGAAGGCTGGCAGACCGCCCAGCCGATAGACCGTCCTGAAGGCATTGGCCATGCCTGAGAGATGGCCACTCACGTGTGCCGAGCTGAGGGCCACATTCTCCTGCGTGTTCAGCAGGGTTTTGCACACGTCCAGAGGTGTGGTGACTGCAGCAGACACTGCGCCGGCCGCAGCCCCAGACAGAATATGTGTCCCGGGCCAGTACTGCCGCTGAGGGTTCAGCCACTCCTGCATAAACTCATAGGTGATGAAGTGCACAGCCTGGAAGGGAATGTTCATGGTGAGCTGAGTGCTGTAGCTGCGGTAGAAGGCAGCCAGGCCCTCGTTACGGCTGACCGTCATCACGCAGTCCCACAGGCCTCGGTAAGGGGAGTTATACATCTGCATGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69204 lncRNA upstream 79860 11223680 ~ 11228499 (+) True G51290
TU69203 lncRNA upstream 107265 11200786 ~ 11201094 (+) True G51289
TU69202 lncRNA upstream 107692 11200321 ~ 11200667 (+) True G51288
TU69180 lncRNA upstream 258343 11049815 ~ 11050016 (+) True G51268
TU69158 lncRNA upstream 315586 10934454 ~ 10992773 (+) True G51255
TU69234 lncRNA downstream 22088 11337609 ~ 11427430 (+) True G51312
TU69235 lncRNA downstream 30672 11346193 ~ 11350228 (+) True G51313
TU69272 lncRNA downstream 125043 11440564 ~ 11442912 (+) True G51338
TU69324 lncRNA downstream 175974 11491495 ~ 11492137 (+) True G51376
TU69338 lncRNA downstream 233462 11548983 ~ 11550641 (+) False G51389
XM_007235237.3 mRNA upstream 21144 11284887 ~ 11287215 (+) True nkx3-1
XM_007235236.3 mRNA upstream 48897 11255718 ~ 11259462 (+) True nkx2-6
XM_007235225.3 mRNA upstream 87235 11204075 ~ 11221124 (+) True stc1
XM_007235224.3 mRNA upstream 232529 11061148 ~ 11075830 (+) True LOC103034408
XM_022671127.1 mRNA upstream 552610 10732902 ~ 10755749 (+) True LOC103038184
XM_022670186.1 mRNA downstream 273803 11589324 ~ 11698963 (+) True LOC103043198
XM_022670190.1 mRNA downstream 595647 11911168 ~ 11921164 (+) True npl
XM_022670191.1 mRNA downstream 595647 11911168 ~ 11921164 (+) False npl
XM_007245810.3 mRNA downstream 613777 11929298 ~ 11935136 (+) False LOC103023153
XM_007245809.3 mRNA downstream 613778 11929299 ~ 11935136 (+) True LOC103023153
XR_002650141.1 other upstream 1177558 10123720 ~ 10130801 (+) False nfu1
TU68705 other upstream 1525638 9643374 ~ 9782721 (+) True G50889
TU68335 other upstream 2963845 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 3029603 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 3087197 8207342 ~ 8221162 (+) True G50568
TU69382 other downstream 517160 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 1121884 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 1121885 12437406 ~ 12448516 (+) True znf692
TU69789 other downstream 2000218 13315739 ~ 13327325 (+) False G51743
TU69793 other downstream 2041204 13356725 ~ 13368274 (+) True G51745

Expression Profile