RNA id: TU69358


Basic Information

Item Value
RNA id TU69358
length 1840
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G51401
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11713747 ~ 11715615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACTCTTGTAGATAGAAAATTCTTTggcaatgaagaaaaaaaaactcaaaatacgAGAGAAATTCACAAGTGCTGCTTTAGAATTTAAGACAGACAGAAGGACAGACGACCACAGACTAAATCAAGCAGCATGCGGACTGAAACGATGAAGAATTCAGTCAGTCTGGCAGACGATGATCAGAACATGGCTTAAAAAAAGTACATAtggcacatttatttattacaggacTGAGAATTATTAGAACCATGAGAACCATGCAGGAACACTGCAGGACTgcagggcagtgtgtgtgtgtgtgtgtgtgtgtgttagcaggaCAATGTAAAAcagaatgaaataaaataaaataaatgctgtagAAAGAAAGCAGAACAGAACTAATGGCCTTATTTTTTACTGCTTAAGCTCAACAAAGCTTATAAAATTCAGGCTCCAGATGTTTTTAGCACTTTCAAGACGAATTCCaccatttttattgtattaaatcTGTTCAATTCAGTATTTATGATGTAAATACAGTCATTCAGAGTGGATGTGGAGGAACAGCTTTTGTACAGTGGTGGGGATTGGTCCCAATGTCATAATAGTGATGgtgaaataaagtgaaaaatacATAGAACTTTTTTGGGGGTaaatattgtacttttaaaattatatattaatctgaagctctttaaaaaaaactataataaatcaTGTTGGTCTAAACTGGTCCAACCTAACTAAAGAGACAGTCTAGGCTGAATTAAATGAACCAGAAACCATGCTTGGtataaaaatcatgtttttaagccatttatAATTTAAGTGAGCTAAGGCAGGCTTTTGTTGAACATtctaaacaatagaagaagaaaaaaaaactggtgtTGTGTCAATATCTGAAATTCTGGCTTTAAAATTTGCTTTTAGAGGAGCTTTTAACCATTTTTCTAACTCTTCCAATTGACCCCAACTGTGATGTATATTTCTATAAAACATAACAATTCACAAAAATCCACTCTGAATgacatatttgtatatatttacacattttaaccagttatttatatataaatgatcaCATATTGGTGGACGACCCTAGCCCCTCCAGACTAGTGCTACCCCTCCTATTCTTCCACATCCGAAACACTCAACCATAACTCATCTTTACACCtttaaactcattaataaagtgtataaaagTCAGAAACACACCCGTGCAGAACGTGAGGAGAGGCTGTTGGGGTGTTAAACGAATAGTGGAGCCAGTAGCCAGTAAGCTTTCAGtgaataaaacactgtattaaaGGCTGATGGGAATAATTAATTAGCTTAGTGCATAAAAAGTGGGAAAGTTAGTGTGATCATATTTCACTGTGTTCAGTCAGGAGAATAAAGTGTGCTTAAGATCCGTACTGACCAATATAGGCGGGCAGTTTCTCCACTCAGGTCTGTAGGACCCTCAGACTAGTCCACATTTTAACCAATTATAGAATTACACACTTAAAACagttattattactactactactactgctgttaGTACTACTATTTTTATCAATATACAACTAATATTACCATTATTTAAAccattactattattttttactttttcttattacaattacaatccAATTATTATTGTATGATTTATTCTTATTACATTGTATTACGAGGGTGACTGGCAAAATCCCACCCCTTTCACTTGTATCTtacaaatgtatatttatttatatttaaatgtttatatttagacTAACTAATAAACTCATGAAAAcaagtaataacagtgtaaacgGCAGGGTTGTCTCAAGTTGACTTATTACGTTACTAATTAtgaccaccatcaccatcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69357 lncRNA upstream 10413 11701352 ~ 11703334 (+) True G51400
TU69352 lncRNA upstream 58846 11654641 ~ 11654901 (+) True G51395
TU69342 lncRNA upstream 70483 11548983 ~ 11643264 (+) False G51389
TU69347 lncRNA upstream 154414 11557941 ~ 11559333 (+) True G51390
TU69341 lncRNA upstream 157530 11551274 ~ 11556217 (+) False G51389
TU69368 lncRNA downstream 53245 11768860 ~ 11769374 (+) True G51411
TU69385 lncRNA downstream 109878 11825493 ~ 11829845 (+) True G51425
TU69383 lncRNA downstream 115284 11830899 ~ 11831710 (+) True G51424
TU69393 lncRNA downstream 167852 11883467 ~ 11883893 (+) True G51429
TU69392 lncRNA downstream 168394 11884009 ~ 11886479 (+) True G51428
XM_022670186.1 mRNA upstream 14784 11589324 ~ 11698963 (+) True LOC103043198
XM_007235237.3 mRNA upstream 426532 11284887 ~ 11287215 (+) True nkx3-1
XM_007235236.3 mRNA upstream 454285 11255718 ~ 11259462 (+) True nkx2-6
XM_007235225.3 mRNA upstream 492623 11204075 ~ 11221124 (+) True stc1
XM_007235224.3 mRNA upstream 637917 11061148 ~ 11075830 (+) True LOC103034408
XM_022670190.1 mRNA downstream 195553 11911168 ~ 11921164 (+) True npl
XM_022670191.1 mRNA downstream 195553 11911168 ~ 11921164 (+) False npl
XM_007245810.3 mRNA downstream 213683 11929298 ~ 11935136 (+) False LOC103023153
XM_007245809.3 mRNA downstream 213684 11929299 ~ 11935136 (+) True LOC103023153
XM_022670192.1 mRNA downstream 249975 11965590 ~ 12065127 (+) True LOC103041950
XR_002650141.1 other upstream 1582946 10123720 ~ 10130801 (+) False nfu1
TU68705 other upstream 1931026 9643374 ~ 9782721 (+) True G50889
TU68335 other upstream 3369233 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 3434991 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 3492585 8207342 ~ 8221162 (+) True G50568
TU69382 other downstream 117066 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 721790 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 721791 12437406 ~ 12448516 (+) True znf692
TU69789 other downstream 1600124 13315739 ~ 13327325 (+) False G51743
TU69793 other downstream 1641110 13356725 ~ 13368274 (+) True G51745

Expression Profile