RNA id: TU69368


Basic Information

Item Value
RNA id TU69368
length 483
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G51411
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11768860 ~ 11769374 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGTGTCGTGTGCTGCTCTCCGGGGATCGGGGCTGGTACCTCTGCAGGGCCACACCTCCTCCATCCCGGTCCAGATCCAGGCAGAGTGGTAGAGGAGGCCAGGGCAGCAGTGATGCCAGCGGGTACTGAGAAATCATCCTGACCTTCTGACCGCTCCGACCATGACCAGTTCAGTACCAGAGCAGGGCTGGAGGATCCCAGGCCTGATGCAACAAaattgatgatgatgagggtGATGACGATGATGAGGGTGGAAGGTCAGGGCTGGTCTTTCTCCAGTTTATTTGGAAGCTGGGTATAGTCCAGTCTGGTTTTCCAGAGTTTAACAAAGTTTTTCAGAGTTTTCCAGTGTTTTCCAAAGTTTTCCAGTGATGTATCCTAAAGCAGGACCTCAGTGTGAGCTGAGGTGAACTAGTGAACTCTAATAAACACTagaaagctctctctctctctgtctctctctctctgtctgtctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69358 lncRNA upstream 53245 11713747 ~ 11715615 (+) True G51401
TU69357 lncRNA upstream 65526 11701352 ~ 11703334 (+) True G51400
TU69352 lncRNA upstream 113959 11654641 ~ 11654901 (+) True G51395
TU69342 lncRNA upstream 125596 11548983 ~ 11643264 (+) False G51389
TU69347 lncRNA upstream 209527 11557941 ~ 11559333 (+) True G51390
TU69385 lncRNA downstream 56119 11825493 ~ 11829845 (+) True G51425
TU69383 lncRNA downstream 61525 11830899 ~ 11831710 (+) True G51424
TU69393 lncRNA downstream 114093 11883467 ~ 11883893 (+) True G51429
TU69392 lncRNA downstream 114635 11884009 ~ 11886479 (+) True G51428
TU69390 lncRNA downstream 132509 11901883 ~ 11923518 (+) False G51427
XM_022670186.1 mRNA upstream 69897 11589324 ~ 11698963 (+) True LOC103043198
XM_007235237.3 mRNA upstream 481645 11284887 ~ 11287215 (+) True nkx3-1
XM_007235236.3 mRNA upstream 509398 11255718 ~ 11259462 (+) True nkx2-6
XM_007235225.3 mRNA upstream 547736 11204075 ~ 11221124 (+) True stc1
XM_007235224.3 mRNA upstream 693030 11061148 ~ 11075830 (+) True LOC103034408
XM_022670190.1 mRNA downstream 141794 11911168 ~ 11921164 (+) True npl
XM_022670191.1 mRNA downstream 141794 11911168 ~ 11921164 (+) False npl
XM_007245810.3 mRNA downstream 159924 11929298 ~ 11935136 (+) False LOC103023153
XM_007245809.3 mRNA downstream 159925 11929299 ~ 11935136 (+) True LOC103023153
XM_022670192.1 mRNA downstream 196216 11965590 ~ 12065127 (+) True LOC103041950
XR_002650141.1 other upstream 1638059 10123720 ~ 10130801 (+) False nfu1
TU68705 other upstream 1986139 9643374 ~ 9782721 (+) True G50889
TU68335 other upstream 3424346 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 3490104 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 3547698 8207342 ~ 8221162 (+) True G50568
TU69382 other downstream 63307 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 668031 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 668032 12437406 ~ 12448516 (+) True znf692
TU69789 other downstream 1546365 13315739 ~ 13327325 (+) False G51743
TU69793 other downstream 1587351 13356725 ~ 13368274 (+) True G51745

Expression Profile