RNA id: TU69594


Basic Information

Item Value
RNA id TU69594
length 1764
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G51583
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12540224 ~ 12543950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCACTTTAAATAGGAACCACACATTTCACAGGTGGGTTGAAATAAATGCACAGATTCAGTATCAGAGATGTCGAGGCGATATCGAGAAAAATAACGTGTGCATATATTTTCTCTAACAGGAACTAACTGTGTCTATTTGGCGACGCCTTAAATCTGGTTACACAGCCTGAAGTCTGAACTCTATAAACGTAAAAATTCTTCTAAACTGAACAAACTGAGATCTGTTATATCCGTTTTTACTAAAGTACGGAAGATCTACTTcaaaatattacagtttttttaaaaaagagaatcTCCACActcgtgaaaaaaaaaaaaaaaaaaaaaagtctgactCTGGTAAATACATTCGATTAAAAACAACGTTtgaacaacatttttaaaacatgcgtccaacaaacaaaccaactCACTTCCAGTTATGTTAAATGGTCATTTACAGACATTCTGTCAGGGTCcgcaaaaatttaaaaagaccCCCCTCCCTCTGCCCTTTAAAATTCACAACTTTTAGAAGCTCTCAACTAACATGCAGAACCGGACTGAAGAGTGAATCTGACTATCTGAGAAGAGAAGAAGCTCTCTACACTGTCTACGTTCCTCCAGACTGGATAAACTGGCGGTTCAGGCCTTTATATAGAGTGAGgaactctctctatctctaccaCCCGTCACCATAAACATCGGTAAGCTTATTTACATCGGAGAACAAACAGGAGGCCTGGGGGGCGGGGCGGCCGTAGGCTGTTGAACACTGACTTCATCAGCTTTGACTGTACACTCCTCTCCTCTACACTCATACATAAAAATTATAAGGTGCTACACAAAAGATTCTTTAAGCAATTCCACTTTTAAGGAAGAACCACCAATTTTTTGGTTTCCAGAAAGATTTTACCATTTTTCTCCCAAGCAAGTCTGTAAATCTTTACGGAAGCTCAGAGTGGATCAGTAGACTAAGACGCTGACACTATGGCCAGAACTTCATAAAtcctggtttgaatcctgggtCATACTGGGACTatagcatcagcagccagagacagagaaaaaaaggctaaaaaggAGGAATTGGGACATACTGGGACAATGGCATCAGCAGCTAgagccagagagaaagagagtgaaagacgGCAATTGGGACATACTGGGACtatggcatcagcagccggagaaagagagtgtaagagagtaACTGAGACATACTGTGACTATGGCAAGAGAATGAAAGAGGGCAATTTGGGACATACTGGGTCATACTGGGACTatagcatcagcagccagaaccagagagaaagagagagaaagtcagCAATTGGGAAATACCGGGACtatggcatcagcagccagagccagagagaaagagagtgaaagagggctttcctctgagtgcagtTGGTGGAAGTTGGGAAAAGGGGCGGTGTCTATCCTctcatgtattggaggaggcatgctCTTGCCCTTACTACTCTCTCCTTACTAGTGTTGGGAGCACTGTACAgaattaaaaaggcttttttttttttttttttttactttgtggcACTGCTTAAAGAATCGATCGTAGACCcttgttttcttaattttctaTTTAAGAGAGTATAATTTTATAATGGCGTGTCTGACCAGTTTGcttacacacaaatttaaaaaaattaagtaactcaactcagtttcaagacttaaatgttacatagagtagttcttttattaaactatacttaatttatttttgctgaatcaatcctttcttttagtaactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69588 lncRNA upstream 24340 12515101 ~ 12515884 (+) True G51582
TU69587 lncRNA upstream 24619 12514385 ~ 12515605 (+) True G51581
TU69569 lncRNA upstream 92584 12397603 ~ 12447640 (+) True G51569
TU69558 lncRNA upstream 356245 12183779 ~ 12183979 (+) True G51558
TU69556 lncRNA upstream 363235 12176774 ~ 12176989 (+) True G51556
TU69585 lncRNA downstream 9 12543959 ~ 12545418 (+) True G51580
TU69603 lncRNA downstream 79646 12623596 ~ 12648417 (+) True G51588
TU69604 lncRNA downstream 108047 12651997 ~ 12653438 (+) True G51589
TU69620 lncRNA downstream 154839 12698789 ~ 12739607 (+) True G51604
TU69714 lncRNA downstream 291792 12835742 ~ 13290053 (+) True G51682
XM_022670202.1 mRNA upstream 1495 12451420 ~ 12538729 (+) False LOC103047368
XM_022670203.1 mRNA upstream 1495 12460242 ~ 12538729 (+) True LOC103047368
XM_022670198.1 mRNA upstream 91708 12437411 ~ 12448516 (+) False znf692
XM_022670199.1 mRNA upstream 92370 12437407 ~ 12447854 (+) False znf692
XM_022670201.1 mRNA upstream 95241 12437405 ~ 12444983 (+) False znf692
XM_022670211.1 mRNA downstream 61315 12605265 ~ 12644596 (+) True acsbg2
XM_022670210.1 mRNA downstream 68036 12611986 ~ 12644596 (+) False acsbg2
XM_007245788.3 mRNA downstream 303115 12847065 ~ 12876713 (+) True LOC103044019
XM_007245789.3 mRNA downstream 314151 12858101 ~ 12876713 (+) False LOC103044019
XM_022670213.1 mRNA downstream 334686 12878636 ~ 12894487 (+) True LOC103040421
XR_002650026.1 other upstream 91708 12437406 ~ 12448516 (+) True znf692
XR_002650027.1 other upstream 92042 12437405 ~ 12448182 (+) False znf692
TU69382 other upstream 658203 11832681 ~ 11882021 (+) True G51423
XR_002650141.1 other upstream 2409423 10123720 ~ 10130801 (+) False nfu1
TU68705 other upstream 2757503 9643374 ~ 9782721 (+) True G50889
TU69789 other downstream 771789 13315739 ~ 13327325 (+) False G51743
TU69793 other downstream 812775 13356725 ~ 13368274 (+) True G51745
TU70301 other downstream 1762664 14306614 ~ 14324917 (+) True G52110
TU70470 other downstream 2374494 14918444 ~ 14918850 (+) True G52249
TU70487 other downstream 2459486 15003436 ~ 15003895 (+) True G52263

Expression Profile