RNA id: XR_454832.3


Basic Information

Item Value
RNA id XR_454832.3
length 4595
RNA type misc_RNA
GC content 0.44
exon number 22
gene id fbxo11
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20794025 ~ 20825674 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGAAGTGTTTAAGGCTGCGAGGAGCTCTGCTGGGGACGGAGGGACCTTATGTTAGCGCAGAGCGGAGACCGAGCGAGGGAAGCGCTGTAATTTTTTGGAGGAGAAACAAGAAATTCTACTCGCCAAATGAACTCCGTCAGAGCGACCAGCAGGAGACCGAGGAGAGTGAGGCCGCGCCCGGTGCAGCCGGAGAGGAACAACGGCGAAAGAGATGAGGACGTCCCTGCAGATATGGTTGCAGAAGAATCTGGTCCAGGAGCTCAAAACAGTCCATACCAACTCCGTAGAAAGTCCTTGTTGCCTAAGAGAACTGCGTGTCCCACAAAAAGCAGTATGGAGggagcctccactTCCGCTACAGAAAACTTTGGCCACAGAGCAAAACGCGCTAGAGTGTCAGGAAAGTCCCAAGAACTTCCAGCTGCCCCTGCAGAACAGTATCTCCAAGAAAAGCTTCCAGATGAGGTGGTTCTGAAGATTTTCTCCTACCTGCTGGAGCAGGACCTGTGCCAGGCTGCATGTGTGTGCAAGCGTttcagtgagctagctaatgaCCCCATTCTCTGGAAGAGGTTATACATGGAGGTGTTCGAGTACACACGGCCCATGATGCATCCAGAGCCAGGAAAATTCTACCAGATAAACCCTGAAGAATACGAGCAGCCCAACCCGTGGAAGGAAAGCTTTCAGCAACTGTATAAAGGCGCACATGTAAAGCCTGGTTTTGCAGAGCATTTCTACAGTAATCCAGCCAGATATAAAGGCAGAGAGAACATGCTGTACTACGACACCATTGAGGATGCTTTAGGTGGTGTACAAGAGGCCCACTTTGATGGGCTGATTTTTGTTCATTCTGGCATCTACACAGATGAGTGGATCTACATCGAGTCTCCCATCACGATGATTGGTGCAGCTCCAGGAAAGGTCGCTGATAAAGTAGTCATTGAGAACACTAGAGATTCAACGTTTGTGTTTATGGAGGGTTCTGAAGATGCGTATGTGGGTTATATGACCATTAGGTTCAATCCTGATGATAAATCAGCCCAGCATCACAATGCACACCACTGCCTGGAGATCACAGTGAACTGCAGCCCCAACATTGACCACTGCATTATCCGCAGCACTTGCACAGTGGGCTCAGCAGTGTGTGTAAGCGGCCAAGGTGCGTGTCCTACCATAAAGCACTGCAACATCAGTGATTGTGAAAACGTGGGGCTCTACATCACAGATCACGCCCAGGGCATTTATGAAGATAATGAAATCTCAAACAATGCGCTGGCGGGAATCTGGGTGAAAAACCATGGCAACCCCATCATCAGGAGGAACCATATCCATCACGGCAGAGACGTGGGAGTGTTTACATTCGACCACGGCATGGGCTACTTCGAGAGCTGCAACATCCACAGAAACAGGATCGCAGGTTTCGAGGTGAAGGCCTACGCCAACCCCACGGTGGTACGCTGTGAAATTCACCACGGCCAAACAGGAGGCATCTACGTCCATGAGAAGGGCCGGGGACAGTTCATAGAGAATAAAATCTACGCCAACAATTTTGCTGGTGTGTGGATCACCTCCAACAGTGACCCCACGATTAGGGGTAACGCCATCTTCAATGGAAACCAAGGAGGTGTTTACATATTTGGAGACGGCAGGGGTCTCATAGAGGGAAACGATATTTATGGAAATGCCCTGGCTGGCATTCAGATCAGAACTAACAGCTGCCCTATAGTGAGACACAACAAGATCCATGATGGACAGCATGGAGGCATCTATGTGCACGAGAAGGGCCAGGGTGTTATCGAGGAGAATGAAGTCTACAGCAACACTCTGGCAGGAGTATGGGTGACCACAGGGAGCACACCTGTACTCAGAAGGAACAGGATACATAGTGGCAAACAGGTTGGCGTTTACTTCTATGATAATGGGCATGGAGTATTGGAAGACAACGACATCTACAACCACATGTACTCTGGGGTCCAGATCAGAACTGGGAGCAACCCTAAAATTAGACGAAACAAAATCTGGGGAGGGCAGAACGGAGGCATTCTTGTTTACAACTCGGggCTGGGCTTCATTGAGGACAATGAGATCTTCGACAATGCCATGGCCGGGGTGTGGATTAAGACGGACAGTAACCCCACACTGCGCAGGAATAAAATCCACGACGGCCGGGATGGAGGCATCTGCATATTCAACGGTGGCAGGGGACTGTTAGAGGAGAACGACATCTTCAGAAACGCCCAGGCTGGTGTTCTCATAAGTACAAACAGTCACCCGGTTCTGCGGAAGAACCGAATATTTGACGGCTTTGCTGCAGGCATTGAGATCACAAATCATGCCACAGCAACACTAGAAGGCAATCAGATATTTAACAACAGATTTGGGGGGCTGTTTCTAGCCTCTGGTGTCAATGTCACTATGAAAGataaCAAAATCTTGAACAATCAGGATGCCATAGAGAAGGCTGTGAGCAGAGGTGCCACACCTGTAATACAACAGACAGAAATGCAATCTGTGTGAACTGTATCAAGAAATGCCACCAAGGGCATGATGTCGAGTTTATACGGCATGATAGGTTTTTCTGTGACTGCGGCGCGGGTACTTTGTCGAACCCTTGCACGTTAGCTGGAGAGCCGACGCACGACACGGACACTCTGTACGACTCGGCGCCTCCTATAGAGTCAAACACGTTACAACACAACTGAGGCCCAGCCTGCCCTCCTCCATCTCAGCACCCTGGTCTTTAATCGAACCTGCCTACAAAACGAGAGCTTCTGCCACTTTGGGCTGGGAAAGACTCTGTGTAAAGAGACAGGACCGCGAAATCTTTCACTTCAATTGTTCTGTGGGAAGGAAAAACCATTTTGAGGAGATTTGTGGACCTCCTTTGGAAAGCTGCCTCTTTGCTGGATAGAGATCTGTTGTCTGTGTGTTGCTCTAAATGAAAAGTGTTCTGATGCAAATGGAAGCAAGAGATTCcctgttcagtttttttattataattattattattattattattccccTTTTCAGTTCAGTGCAAAAACGGCTCTTGACCCACAAAGAATGGTTAATGTTTGGGTAGAGCTTTGGAAGAGTTGAGAGTTGCACAGAGAAGCAATATGTTGACTCAGGATTCTGGAGATTAAGAGACGAGACTACAGCGGCGTCCAGTTTTGGAAGAGGAACGATGGAGAACGTCCTAGGTCTTTCCAAACCGATAACCCTGTGCAGTCTCTGTGATGTGTGCAGGTTCAAGCGGAGAAGTTCTACTGCAGTTTTGTACAGACGTGTAACAGTGGCCAGAAACACTTGGAGCCATTAACCCCTCCCCCAGGGCAGCTTCCTGAACCTGGATATAGGAGGGAGAgccatgatttaaaaaaaaaaaaaaaaaaaaaaacatggctttCTTTGGCAACTGTTTCTAGGTAACAGATGTGCTGATTATATGTatggtataaaaaaaagaaagctaaaaaaaaaatgtggttagcacttgcttttttttaatatgttaatgTTATTCTGATCaacaaatatgattttaatgCTTTCTCAtgtagttttgtattttcaagcaaaaaaaaatcttactgtATTTGaatgtcttttattttattatatattataattattattattattgttattaatattttcattaGCGCACGTTAGGCTTGTAATCATACTGTGTCTCAGCATATAAATTCTTTCTGTGAAAGAGGATTAacgagaaaaacaaaatgagatTTGGAAAACACGTAACACTAAAATATGTCCTCCAGCTATGGTTTTCGATATGCGAGGTATGAAGCGGTTGTTTGTgcgggatttttttttttttttttttttttttttttttttatttctattttataaatgtgaatGTGACAGTTCTAGTCTATTTGTattccagttccacagttcAGTGTTTGGGTCTTTATTCACTGcctagttttgttttttgagacGATGCCTTTTTGAaagtcgaaaaaaaaaaaaaagactgatttctaaacagaattaaaatccACAAAGAAAGGCAATGTTCCTGTTCTAATGTTCATGTGGAAGAATATTATCAGGGTGAAGTCTTTCTTCActctttaaattagtttaaatacatattatttttattttgtagttttattattaacatGACATTGATTAAAATGTCCCCCTctttatattttagtatatttttagtagttttttttgtttgttttttgtttgtttgggtccGAGGCCCTTCACGTGCCTGTGTTTAAGTGCTACACACAGAATTGAAAAGCATCGCTGGAGTTTGCTCTGTTATAAAGGCCCCGGCCTCTTAGCTGAGACACATATCTCTACAGCCTTGTTGTCTTTTGCCCCTCAGATTCATCCCCATCTATGTGTAATGTGGTGACTGTGGCTTCTCATGCCGCCTGAATTGTATGCATGTACCATAACATCTAGACTTAATATATTGTGAAGTATTCAATAACCATTATGTAGATGCTAGTATGAATTTAAAAAGGGTTTAATTTcctagaaaaaaaggaaaaaggaaactggtcattttttaagaaaataaactttattagATCA

Function

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72233 lncRNA upstream 38084 20755722 ~ 20755941 (+) True G53572
TU72172 lncRNA upstream 230784 20562311 ~ 20563241 (+) True G53531
TU72166 lncRNA upstream 233191 20557982 ~ 20560834 (+) True cript
TU72062 lncRNA upstream 330140 20344023 ~ 20463885 (+) False LOC103044634
TU72056 lncRNA upstream 433865 20341999 ~ 20360160 (+) False G53431
TU72254 lncRNA downstream 15193 20840867 ~ 20841695 (+) True G53586
TU72245 lncRNA downstream 43615 20869289 ~ 20874487 (+) False G53578
TU72243 lncRNA downstream 46058 20871732 ~ 20874487 (+) True G53578
TU72244 lncRNA downstream 46058 20871732 ~ 20874487 (+) False G53578
TU72246 lncRNA downstream 46058 20871732 ~ 20875453 (+) False G53578
XM_022670344.1 mRNA upstream 2842 20775594 ~ 20791183 (+) True msh2
XM_022670953.1 mRNA upstream 19727 20768405 ~ 20774298 (+) True LOC103041876
XM_007230968.3 mRNA upstream 19731 20768407 ~ 20774294 (+) False LOC103041876
XM_007230969.3 mRNA upstream 103605 20681806 ~ 20690420 (+) True calm2
XM_007230970.3 mRNA upstream 163740 20611971 ~ 20630285 (+) True LOC103042909
XM_022670346.1 mRNA downstream 7075 20832749 ~ 20870619 (+) True LOC103026529
XM_022670899.1 mRNA downstream 847900 21673574 ~ 21747080 (+) True LOC103028037
XM_022670351.1 mRNA downstream 923158 21748832 ~ 21786839 (+) True tmem94
XM_022670352.1 mRNA downstream 923158 21748832 ~ 21785799 (+) False tmem94
XM_007250116.3 mRNA downstream 966882 21792556 ~ 21808496 (+) False tdrkh
TU72167 other upstream 233191 20557884 ~ 20560834 (+) False cript
TU72061 other upstream 366822 20419221 ~ 20427203 (+) True LOC103044634
TU72063 other upstream 366822 20419221 ~ 20427203 (+) False LOC103044634
TU72064 other upstream 366822 20419221 ~ 20427203 (+) False LOC103044634
TU72045 other upstream 505016 20243150 ~ 20289009 (+) True G53426
TU72536 other downstream 1093551 21919225 ~ 21921594 (+) True G53804
TU73348 other downstream 4720318 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 4738987 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 4739568 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 4741221 25566895 ~ 25566966 (+) True trnaw-cca_3

Expression Profile