RNA id: TU73715


Basic Information

Item Value
RNA id TU73715
length 1412
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC103023473
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26962892 ~ 26973026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCTTATTTACTAaaaactgcgcatgcgcgagCATGAGTTCACTCAGGAAGAGATGGGAATCATAACATGAGGCTGGATAAAGGAAGTATTCGTTGTGCTACATAACTGAGTGAAGAAAAGTAGTCGAAAGAACAGTTTAAAATGCCTGCCAGAAACACAGTGACGAGTGGGCTGCCCAACAGCAAAGTGAGATACTCCAAGCTTGCAAGTGATGATGATGGATATATTGACCTCCAGttcAAGAAGAGTCCACCCAAGGTCCCATATAAGGCGATTGCTTTGGCCTCTGTTCTATTTCTGATTGGCACAATTTTGATCATCATAGGATCTCTTCTCTTAGCAGGATATTTTGAAATTAATGATCACCGTGACCGCACTATACCGGTCCTTATCATTGGGATCCTTGTTTTCCTTCCTGGATTCTACCATTTACGCATAGCCTACTATGCCTCTAAGGGCTACCGAGGATACTCCTACGATGACATCCCAGACTTTGATGATTGAGTAACATGGAACGTCGTGACAGCTCGCTGACGTTTCTGATAGATCTCTGAAGAAGAGCATTCTTTCATGTGCAGACAGACAAAGCTGCGGTTTTGACAAGCTCCCATTTACAAGTGCACTACTGGAGAAATGATGATGGTACTTGTTAGCGCTGAATATGCTTCTAAAAAAGCTGATAATTTGAGCATAAAGTATCCAGCATGTGCATTTTCATTCCATACCTCagtaatgggaaaaaaaaatttctGAGACTACATTGCCATGTTTCCTTTAAACCAGATTTGGTTCTGATTAGAACTGAGACAGCATTTGGAAGCATTTGCagtatctgtttttatttaacattgcttGGAATTGGATTGGGGCTGCAGTAGAAGTGGTTTTCAGGAGGGGAAAAGCTTGTTATCTGTGTCACTTTTGATAATGTTCTGTAGAGCTTAATCTACACACTGCCTTGATCTTCCACTGCAGTAGATTTAGTATCACATTCCATGATTTGTATCATTTCAGAGCTATAACAGCACACCTTACCAttctattgtattatttatttgtattaattagtATTTCCCCTTTAGTGTTATGATGTTTCCTGTCCATTCTATTGCActgtaaatgctgtaaaatttAGAGATGTGTCCAATCTTTTCTTTAAAGGGCCGGTGTGACTGCAGATTTTCATTCTAAACACCCAGCAGCACACCTGTTTTCACTTGTTTAATTAATTGGTCATTCTTTAAACAACTGATCACGTGTTTCAGTGTGACTGAAGGAAAAGCCACTCAAGCCCTTTGCAGATATGATTGAACGACCCTGATCTACAGCATCAAACATCAATTCTTTTACATTTCTgtaactaaaaattaaataaaggatttaaatctttttaaaagaaGGACTGATCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73714 lncRNA upstream 16017 26945812 ~ 26946875 (+) True G54680
TU73631 lncRNA upstream 281558 26681094 ~ 26681334 (+) True G54614
TU73628 lncRNA upstream 281814 26680631 ~ 26681078 (+) True G54611
TU73558 lncRNA upstream 319139 26641697 ~ 26643753 (+) True G54560
TU73510 lncRNA upstream 866527 26094352 ~ 26096365 (+) True G54529
TU73720 lncRNA downstream 46035 27019061 ~ 27020194 (+) True G54686
TU73732 lncRNA downstream 73120 27046146 ~ 27049083 (+) True G54693
TU73796 lncRNA downstream 174389 27147415 ~ 27578063 (+) True G54734
TU73799 lncRNA downstream 183920 27156946 ~ 27157648 (+) True G54735
TU73816 lncRNA downstream 253424 27226450 ~ 27236132 (+) True G54747
XM_007247209.3 mRNA upstream 101028 26819581 ~ 26861864 (+) True LOC103024323
XM_007247210.3 mRNA upstream 152204 26797311 ~ 26810688 (+) True LOC103024632
XM_015605303.2 mRNA upstream 166865 26784220 ~ 26796027 (+) True LOC103031292
XM_022670414.1 mRNA upstream 202666 26713060 ~ 26760226 (+) True LOC103031601
XM_007247213.3 mRNA upstream 261283 26691485 ~ 26701609 (+) True LOC103025471
XM_007247204.2 mRNA downstream 1906 26974932 ~ 27018977 (+) True LOC103022969
XM_007247197.3 mRNA downstream 63098 27036124 ~ 27041538 (+) True ciao1
XM_007247199.3 mRNA downstream 77278 27050304 ~ 27059342 (+) True cdc45
XM_007247194.3 mRNA downstream 103341 27076367 ~ 27118700 (+) True LOC103046559
XM_007247193.3 mRNA downstream 147785 27120811 ~ 27141616 (+) False sept5
XR_002650058.1 other upstream 411322 26537052 ~ 26551570 (+) False LOC103040153
trnaw-cca_39 other upstream 1364144 25598677 ~ 25598748 (+) True trnaw-cca_39
trnaw-cca_38 other upstream 1364977 25597844 ~ 25597915 (+) True trnaw-cca_38
trnaw-cca_37 other upstream 1365808 25597013 ~ 25597084 (+) True trnaw-cca_37
trnaw-cca_36 other upstream 1367142 25595679 ~ 25595750 (+) True trnaw-cca_36
TU73716 other downstream 47218 27020244 ~ 27022891 (+) True G54682
TU73727 other downstream 59809 27032835 ~ 27034938 (+) True G54690
TU73818 other downstream 238276 27211302 ~ 27218003 (+) False LOC103030972
TU73937 other downstream 730746 27703772 ~ 27712578 (+) True G54841
TU74065 other downstream 864280 27837306 ~ 27859949 (+) False ipo11

Expression Profile