RNA id: TU73799


Basic Information

Item Value
RNA id TU73799
length 231
lncRNA type intronic
GC content 0.47
exon number 2
gene id G54735
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27156946 ~ 27157648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAAAACATTATAAAGACAGATGGGAGCTGGTGATGGGCGTGCTTTCACGTTTCCCACTAGAACCTTCATAGATCGTACAGTTTTGtgattagatttggactctttggccgtttttctgctagaactgcgcactctctccgcttttagactctttggcccgcttttctgcgctagaaacgcgcaccctctccgcttttagactctttggcctgttttttgcgctagaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73732 lncRNA upstream 107863 27046146 ~ 27049083 (+) True G54693
TU73720 lncRNA upstream 136752 27019061 ~ 27020194 (+) True G54686
TU73717 lncRNA upstream 186064 26969363 ~ 26970882 (+) True G54683
TU73705 lncRNA upstream 188759 26936159 ~ 26968187 (+) False G54673
TU73816 lncRNA downstream 68802 27226450 ~ 27236132 (+) True G54747
TU73798 lncRNA downstream 347510 27505158 ~ 27578063 (+) False G54734
TU73918 lncRNA downstream 506244 27663892 ~ 27668649 (+) False LOC107197454
TU73921 lncRNA downstream 506244 27663892 ~ 27668409 (+) False LOC107197454
XR_002650062.1 lncRNA downstream 560327 27717975 ~ 27719836 (+) True LOC111192651
XM_007247193.3 mRNA upstream 15330 27120811 ~ 27141616 (+) False sept5
XM_007247192.3 mRNA upstream 15330 27130191 ~ 27141616 (+) True sept5
XM_007247194.3 mRNA upstream 38246 27076367 ~ 27118700 (+) True LOC103046559
XM_007247199.3 mRNA upstream 97604 27050304 ~ 27059342 (+) True cdc45
XM_007247197.3 mRNA upstream 115408 27036124 ~ 27041538 (+) True ciao1
XM_007247190.3 mRNA downstream 6619 27164267 ~ 27181242 (+) True dhx37
XM_007247189.3 mRNA downstream 6723 27164371 ~ 27181242 (+) False dhx37
XM_022670902.1 mRNA downstream 30746 27188394 ~ 27206043 (+) True LOC103044927
XM_022670419.1 mRNA downstream 53907 27211555 ~ 27222867 (+) False LOC103030972
XM_022670417.1 mRNA downstream 53909 27211557 ~ 27222867 (+) True LOC103030972
TU73727 other upstream 122008 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 134055 27020244 ~ 27022891 (+) True G54682
TU73715 other upstream 183920 26962892 ~ 26973026 (+) True LOC103023473
XR_002650058.1 other upstream 605376 26537052 ~ 26551570 (+) False LOC103040153
trnaw-cca_39 other upstream 1558198 25598677 ~ 25598748 (+) True trnaw-cca_39
TU73818 other downstream 53654 27211302 ~ 27218003 (+) False LOC103030972
TU73937 other downstream 546124 27703772 ~ 27712578 (+) True G54841
TU74065 other downstream 679658 27837306 ~ 27859949 (+) False ipo11
TU74355 other downstream 1488416 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 1488416 28646064 ~ 28649113 (+) False asphd2

Expression Profile