RNA id: XM_022670444.1


Basic Information

Item Value
RNA id XM_022670444.1
length 4554
RNA type mRNA
GC content 0.49
exon number 30
gene id ipo11
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27814215 ~ 27938389 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGATGATTGCGCGCGACATGGGCACGCGCGGCGCGTgaggagctgcaggagaagTGAGAGAGTGCACGAGGAACAGaCTCAACCATGGACCTCCACAGTGCTGGCTCCATGGTTCTGCAGGCTCTGACCCAGGCCACAAGCCAGAACACGGCTGAGCTGAAGCCCGCTGAGGAGCAACTCCGACAGTGGGAGACACAACCCGGCTTCTATTCTGTACTGCTGAGTATCTTCAATAACCACATGCTGGATGTGAATGTGCGCTGGCTGGCTGTTCTTTATTTCAAGAATGGAATCGATCGATACTGGAGGAGGGTCGCCCCACATGCTTTATCAGAGGAAGAGAAATCATCTCTCAGAGCTGGCCTCATCACAAACTTTAACGAGCCAGTCAACCAGattGCGACACAGATCGCAGTGCTGATAGCGAAGGTGGCGCGTTTGGACTGTCCGAGGCAGTGGCCGGAGCTGATCCCGGTTCTGCTGGAGAAGGTGAAGGTCCAGGATGTTCTGCAGCAGCATCGAGCGCTCCTCACCTTCTACCACGTCACCAAGACCCTCGCCTCTAAACGGCTTGCTGCAGACCGCCGACTGTTCCAGGACTTAGCCTCCAGTATCTACAGCTTTGCCTGCTCACTGTGGAACCACCACACAGACACGTTCCTCCTGCAGATTCAGACCGGAGACCAGCAGGAGGCGCTGAGCTCTCTGGAGCGCACACTGCTGTCCCTGAaagTTTTGAGAAAGTTGACGGTTCATGGATTTGCGCAGCCGCAGGAGAACCTGGAGGCGATGggcTTTCTGAGTGCGGTGTTTGAAAGGCTGAAGCAGTTTTTGGAATGCTgTCGCCAAGTCGGTCCTGGTCACGCCTGCCGAGAAAAACTTGAGAAGACCATCATTCTTTACACTAAAGTCgtaaCTGCTGACTTCCTGGAGCATCACCCGTACCCCTTCATTCCCCTCATTCAGCGCTCGCTGGAATTCGCCGTCAGCTTCGTCTTCACTCCGGTGGGAGACGGGCTGCTGTTCGAGAGATTTATCGTTCAGTGCATGAACCTCATCAAAATGATTGTCAAAAACGACGCCTACAGACCTGACAAAAACATTGAAGACAGTAAACCTGAGACTCTGGAGGCCCACAAGATTAAGACCGCCTTCTTCACCCACCCGACACTGACCGAGATCGCCAAGAGACTCGTCTCCAAGTACTTCCTGCTGACAGAGGAGGAGCTAATAATGTGGGAGGAGGACCCCGAAGGCTTTGCTGTTGAAGAGACTGGCGGTGATTCGTGGAAGTACAGTCTGCGGCCGAGCACCGAGGTGCTCTTCCTCGATATCTTCCACAACTACAGCCAGACTCTGACGCCGGTGCTGCTGGAGATGATGCACAGCCTGCAAGgtcCCAGTAATGTGGATGATACACTACAGTTGCTTATGAAGGATGCAGtttataatgcTGTGGGTTTAGCAGCGTATGAGCTGTTCGACAGCGTGGATTTCGACCAGTGGTTCAGTAGCCAGCTGCTGGGGGAACTACAGGTCAATCACAACAGgtaTAAGCTGATCCGGAGGAGGGCGATTTGGCTGATTGGTCAGTGGATTGCAGTGAAGTTTAAGCCTGAATTGCGCCCCCTTCTGTACGAGGTTATACTGAACCTCCTGCAGGACCCTGACCTAGTGGTCCGGATTGAGACAGCAACGACTCTGAAGCAGGCTGTGGACGATTTTGAATTCAGGACAGAACAGTTTCTACCGtatttGGAGTGTATATTTGGGCTGCTGTTCCAGCTGTTGCAGCAGGTTAATGAGTGTGACAGTAAAATGCAGGTTCTCCATGTCCTCTCCTGCGTTATAgaacgagtcagcatacagatCCGGCCGTATGTGGGCTGTCTGGTTCAGTATCTCCCTCTCCTGTGGAAACAGTCGGAGGAACACAACATGCTGCGCTGTGCCATCCTCACCACCCTTATACACCTTGTACAGGGTCTGGGAGCTGAAAGTAGGAATCTGTACCCGTTTCTGCTGCCGGTGATTCAACTCAGCACTGACGTCTCTCAACCTCCACACGTCTACCTGCTGGAGGACGGCCTGGAGCTAtgGTTGGTGACGTTAGAAAACTGTCCTTCTATAACACCCGAACTGCTCAGAATCTTCCAGAACATGTCAGCTCTGCTCGAGCTCAGCACGGAGAACGTCAAGACCTGTTTCCAGATCGTAAACGCCTACACCTACCTCTCAGCCTCTGACTTCCTACAGAACTATGGTGAAGGTCTCTGCAGATCTTTCTGTGAATTGCTGAAGGACATCACAAACGAGGGACAAGTCCAAGTGCTGAAGGTGGTGGAGATTGCGCTGAAAGTGAGCCCCCTGTTGGCCCCCCATGTGTTCCAGCCCCTCCTCCCTGCTGTGTTTCGGGGGGTgttggatggagagcgGTATCCTGTGGTGATGTCAGTGTATCTGGGTGTGATTGGTCGGGTTGTCCTGCAGAACTCCAGCTTCTTCAGTGCTCTGCTCTCACAGATGGCTTTAGAAAGTAACCAGGAGATGGACCAGCTGTTGGGGAATATGATTGAGATGTGGGTGGACCGAATGGACAACATCACTCAGCCTGAGAGAAGGAAACTCTCCAGCCTGGCTCTGCTGTCCCTCTTACCATCCGACAACAGCGTGATTCAGGACAAGTTCTGCGGCATCATCAACATCTGCGTGGAGGCTCTGCACGACGTCATGACTGAAGACCCCGACTCTGGAACGTTTAAAGActgtaTGTTGGTCAGCAGTCTGGATGAGCCGAAGTTGTCTGATGATGAAGAGCCTCCGTCGGAACAGGACAAGAGAAGGAAGCTGTTGGCGCTGGAGGATCCGGTCCACACCGTGTctctgcagcagtgtgtgtatgagaagcTGAAGGCTCAGCAGCTGCTGATGGGCGATGCCGGGTTCCAGGCTCTGATGGAAACGGTGGACACAGAGATTGTCCGGCAGCTCCAGGAGTTTCTACAAGGACTGTAAACTACAAACACCAAAACTACACCGACTGAGCTTCctttattatgatgttattgCTTCATATGTTATGCCCTCAAGCACACCATTTGATAGACTAGACTGGGCAAGAgggatttaataataaattgtgaAAATGAAATTGTGTTACAGCAcacagaagaaggaaaaaactgATATGATCAGAAGTATCTGATTTATAAAGAGCTGAGTGACCTAAACAATGTTTACATttcagcagatttttttttaattgaacagTGTTTCTTttgatttacagtgtaaaagaaCCCTCTTATTCCTCCTAACCCCATTTACCCCATACTACTCCCATTTTACCTTACCTTATCGTCTCTTATCCCATCTTAATCCCCCTCTTATTCCTCCTAAACCCATTTACCCCAGACTACCCCATTTTACCTTACCTTACTGTCTCTTATCCCGTCTTCACCCGCCTTTTATTCCTCCTAACCCCATTTACCCCATTTTACCCCTTACCTTACCTAACTTACCTTTATCTCATACTCTACTATTTTCTTACTCCACTCACATCCTTACCCTGTCATACCCCTTTCCCCCTCCTACCCCACATAAACCCATTTACCCCAGCCCCACCCCTCTTTGGTCCACCCAAAGCTTACCATGTCTCACCACAACTAACCCATTTTACCCCTCCATCCCTGTTATCTCACATACAGTCTTTTACTCTATTTCTACCTTACCCCTTTTACACCACCCCATCCCTTTTATCTCACTTACACTCTCTATCTTTATGGCTATTCTACCCCACCATACCCCCTTTTACTCCAACCCCAACCTTATCCCCTCTTTAACACACCCCTTCTTACCCCCCTAACCACTTTTATCCTACCTCTTCTCAGTCTACCTAAACCTTACCCTTTCACTCCACCTTACCTGCTCTTATCTCACCCCTTTTAACAACAACCTTACACACTTTCACAACACCAAACCCCCCATCTTACCCCTCTCCACACCCTCTTACCCCACCCCAGCCTTTCCTTATACCTTACCTTACGTTACGCATGTGCTCTGTTGCGCTCAGAAGTGAGAAAAGCCAAAACTACTTAAAGCTACTAACCTTACTGTTATGTTTGGGTCTTTTTTTCACAGTAgatctgaacacacactcatcaTACTCTGCAGTGAAGTGTATTgaacagtgtgtgtgcgtgtgtgtgtgcgcttcaCTCACAGCTGGAAACATGCTGCTATTCCTACTCAGGACCTGTGGTTCAAATATACAATTCAGCAACCACACAGAGGTCTCACAGTATCCTTTATTTTACAGACACTTTTAGAAGTGTgggttgatttttatttttttatttttgagagaTCAGAGCAGTGGTGAGTAATTAATTATCACTCTGATTTGAGTTCTGATTTTGAATAAACGCCTTATCCTAAACACCTTCCTTGCCTCACTGTAACTAAAGACTcattcacactcactcacatgtTTATTCCACTGTACAAACATTCATTTACACATTAATTCCAATAAAGATTCACATATTGACTGCT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K25201 IPO11, RANBP11; importin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74058 lncRNA upstream 11524 27771524 ~ 27802691 (+) True G54929
TU74075 lncRNA upstream 17907 27788997 ~ 27796308 (+) True G54938
XR_002650062.1 lncRNA upstream 94379 27717975 ~ 27719836 (+) True LOC111192651
TU73918 lncRNA upstream 145566 27663892 ~ 27668649 (+) False LOC107197454
TU73921 lncRNA upstream 145806 27663892 ~ 27668409 (+) False LOC107197454
TU74121 lncRNA downstream 22047 27960436 ~ 27960788 (+) True G54969
TU74156 lncRNA downstream 94502 28032891 ~ 28097293 (+) True G54991
TU74170 lncRNA downstream 188365 28126754 ~ 28127906 (+) True G55004
TU74177 lncRNA downstream 226782 28165171 ~ 28167512 (+) False G55011
TU74178 lncRNA downstream 226782 28165171 ~ 28166767 (+) True G55011
XM_022670908.1 mRNA upstream 35054 27778146 ~ 27779161 (+) True LOC111192712
XM_022670907.1 mRNA upstream 37726 27762611 ~ 27776489 (+) True LOC103041042
XM_022670906.1 mRNA upstream 82530 27720643 ~ 27731685 (+) True LOC103029698
XM_022670905.1 mRNA upstream 96431 27708715 ~ 27717784 (+) True LOC111192710
XM_022670903.1 mRNA upstream 105507 27689712 ~ 27708708 (+) True LOC111192709
XM_022670442.1 mRNA downstream 60998 27999387 ~ 28012033 (+) False LOC111192652
XM_022670441.1 mRNA downstream 61005 27999394 ~ 28013765 (+) True LOC111192652
XM_022670443.1 mRNA downstream 61238 27999627 ~ 28013765 (+) False LOC111192652
XM_007247172.3 mRNA downstream 76817 28015206 ~ 28023603 (+) True rgs7bp
XM_007247167.2 mRNA downstream 215073 28153462 ~ 28157559 (+) True c6h5orf51
TU73937 other upstream 101637 27703772 ~ 27712578 (+) True G54841
TU73818 other upstream 596212 27211302 ~ 27218003 (+) False LOC103030972
TU73727 other upstream 779277 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 791324 27020244 ~ 27022891 (+) True G54682
TU73715 other upstream 841189 26962892 ~ 26973026 (+) True LOC103023473
TU74355 other downstream 707675 28646064 ~ 28649113 (+) False asphd2
TU74356 other downstream 707675 28646064 ~ 28649113 (+) False asphd2
TU74460 other downstream 815641 28754030 ~ 28754817 (+) True G55218
TU74882 other downstream 2590473 30528862 ~ 30550061 (+) True G55532
TU74844 other downstream 2683537 30621926 ~ 30625046 (+) True G55502

Expression Profile