RNA id: TU74356


Basic Information

Item Value
RNA id TU74356
length 1347
RNA type TUCP
GC content 0.42
exon number 2
gene id asphd2
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28646064 ~ 28656818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagcaagagaaagatggGCAAAATtagcatgcgtgtgtgtgtgagtgtatgtgtatgtgtgggtggggggaGGCATATAGAAATGATCATGCTGGACGAACTGCACTGTCTGATGGAGgcaggtgtgtgtatatgttggtgtgtgtttgtttttctacatTTCCAGGACAGAAATTCAAAGCCCATACAGGATCGACCTACAACGGCAACAAAGTGTGCCCCGTGGTGTACCCTGCCTTTCTGCGCTCGTCTGGGCAGAAAGCAGAACAGCGGCATCAACCCCCACCGGCTGGACGCTGCCACACACACTCTTGctgtctccacacacacacttaaacacacacacacacacacacactcaaacgtATCTGGCTGCACCAAAGTCTCAGCACACAGCTGCACCAGGACCCTCCTGTCAGCTCTGAAACGAGTCAATGATGGACAAACGCAGGAGAAAGGACAGTTCAGCTGGACATGAGCTCAAACACACACCATCCTCACTGCCAACAGACGCGTGAtagatgtgtctgtgtgtgagtgtgtatgttagGGCTGTCACTGTTATTTCTGttggcaaaaaagtaaataatcaAATCCTAAAGGCTTCTTACATAACACTGTaccataaaaatagactgttgtttTGATATGGACGTAGTTCAGTCATATTCTCTCATATAATCAAACACATTatagaaattaaatatattttatctaaGTTTTGCAGTCTTTACAGAAGAGTGTTCACTGACAGAGTGAAGGTGTGAGTTGTATGTCAGGAGTTTAAAGCTTACACTACACACCAGATTACCTTTAACAACTTGAACACTTGTTTGTAGGCTAATCACATTTGGCTAATCATGCTGTCTTTAGTGCTTTAGAAGAGTTTTGTTTGTTGTCATAGTTTCACTTGCAGAACTCAACGAAACTAAGAGTGATGTTACCAGAAATGTTAGCAGCTGCGATAATAACACCCACAGCTCATATCTAGTAGCCAAGCTAAAAAAAGTCCAGTCAGAATTTGGGCCTACCATAAACCAGGCTAAGCTAGCCCCATCAGTTAGCAACTAATTTAGCCTGGAGTTGTTGATCAAACCGGAATAACGTCTGTTCATGCATTTCTGCTGTTGTAAGCTAATGGAAGTTAAATGTTTTGCTATGGCAGCTGAtaatttaaagtgatttaaattTCTGTATGTGGGTTTTTGGTAAATTCCTCACTCGTATTCACTTATATTGGCTGAGAACACTTGCACATTTTGGGGAAATACTGAATAAGCTAGGCTAGATACTGGCTGTTTCTCACTGGGTAGTAAATAGTTCATGGTAGTTATggaataatttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74352 lncRNA upstream 27688 28617866 ~ 28618376 (+) True G55151
TU74333 lncRNA upstream 84832 28523937 ~ 28561232 (+) True G55134
XR_002650114.1 lncRNA upstream 110944 28533419 ~ 28535120 (+) True LOC111192729
TU74304 lncRNA upstream 120216 28524391 ~ 28525848 (+) True G55112
TU74331 lncRNA upstream 123707 28521676 ~ 28522357 (+) True G55133
TU74435 lncRNA downstream 66126 28715239 ~ 28715960 (+) True G55205
TU74448 lncRNA downstream 83201 28732314 ~ 28770098 (+) True G55211
TU74455 lncRNA downstream 88484 28737597 ~ 28746491 (+) True G55214
TU74454 lncRNA downstream 91501 28740614 ~ 28746491 (+) False G55214
TU74472 lncRNA downstream 145740 28794853 ~ 28804271 (+) True G55229
XM_007247145.3 mRNA upstream 29619 28602070 ~ 28616445 (+) False LOC103031919
XM_022670466.1 mRNA upstream 29619 28603856 ~ 28616445 (+) True LOC103031919
XM_007247151.3 mRNA upstream 139835 28503352 ~ 28506229 (+) True gpx8
XM_007247149.3 mRNA upstream 144280 28493576 ~ 28501784 (+) True anapc5
XM_022670468.1 mRNA downstream 21577 28670690 ~ 28696975 (+) True cabp1
XM_007247138.3 mRNA downstream 40034 28689147 ~ 28693671 (+) False cabp1
XM_007247137.3 mRNA downstream 54232 28703345 ~ 28713991 (+) True mlec
XM_007247136.3 mRNA downstream 67862 28716975 ~ 28728007 (+) True unc119b
XM_007247133.3 mRNA downstream 80301 28729414 ~ 28733421 (+) True c6h12orf43
TU74065 other upstream 786115 27837306 ~ 27859949 (+) False ipo11
TU73937 other upstream 933486 27703772 ~ 27712578 (+) True G54841
TU73818 other upstream 1428061 27211302 ~ 27218003 (+) False LOC103030972
TU73727 other upstream 1611126 27032835 ~ 27034938 (+) True G54690
TU73716 other upstream 1623173 27020244 ~ 27022891 (+) True G54682
TU74460 other downstream 104917 28754030 ~ 28754817 (+) True G55218
TU74882 other downstream 1879749 30528862 ~ 30550061 (+) True G55532
TU74844 other downstream 1972813 30621926 ~ 30625046 (+) True G55502
TU75269 other downstream 3271707 31920820 ~ 31924095 (+) True G55831
TU75290 other downstream 3325568 31974681 ~ 31977419 (+) True G55844

Expression Profile