RNA id: TU75282


Basic Information

Item Value
RNA id TU75282
length 1275
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G55836
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31933383 ~ 31934697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tATAGACAATCATCAAACTAGAAAAAGCAGCAAAGTCCCATTAGCTTTTGCTGTTTGCCAACACACATTATTCTGGCTATACAGACCTGGAGTGATATACTTTAATAGGTAAAATACCGTAATGGGTACTGTTTAATTCATGTTCCTCTCTTTACCTCATCTTAACATTTATTGCAAATGTCTGAAACTTGAAAAACCAATtgggctaaaaaaaaattacagcccATCACTGGCTGTAATTTAATAATGTGCACCCTAAGTAGAAGTCTCTATGCATTTCCTCCCCCTCACCTCCAGGCGGCGGATGATTTCCCGCAGCGGCAGCGCGCTCTCCGTGCCCCCGATGAAGGTGGTGGTGGGCAGCCGGAACACTTTATCTAGGTCTGACTCATCCAGGCCATAAAAGCCTGAAGGCCAGAGTCAGGCCACAGGACAAGCataggagaggaggagtggggagaggagagaaagagagaggggggaggggAGGAAAAAGGGGCACAGCAGCCGTGAGGATGACAGAAAGCGAGAAAGGAAGACATGAATGGTGAGAAGAAGCAAAAAGATCagaaaatgatacaaaaaatgaCAGAGACAAGCATGAAGATAAacagcaacagagagagagagagagagaaagagagagtgagagagagaaaggaggggGGGAACATAACCAAGTGAGTGGAGGCATGTGatgaatataaacaaacagcatGAGCAAACATTCAAAACATTCCATACAGTGATATGATGGAAGTGATATGGGTTAGaaagatattttattataattaaaaaagaaacattagcAAGCCAAAGCCACAAGTGTTTGAATGGGATATTCAGGGTTAGCATACAAACGGATGGGGGAGAGCAGATTAAAAGAAATggacagaaaaggaaaaaataaagtaaaaaagggGAAAGGAGGGTGGGTTATAAAATAAGCACGACAGTGAGAAGAATTTGGGGAGGTCGAAATATAACaataaggaaagaaaaagaaaaacaagaaggtTAACATTGTTATCATCAGTTCACTTTGATTGGGTTATTAGTGTTAATATGTCTGGCTGAAGCAGCTTAGCGCTGAGGTGTTGATTGTGTGCAATTATATGAAGCGAAAATTCAGCTAAGTTAAAGCTTTATGAACGAGATATAAAATGGTGGTGCTTTTAGTGAActaaattcattatttaaaaaaaaaaatcctgcaaaAGGTTCTTTTAGAAACACCACAGAAAAACAATTTCTGATTACAGTAATACGTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75256 lncRNA upstream 16924 31911997 ~ 31916459 (+) False G55821
TU75187 lncRNA upstream 203135 31728742 ~ 31730248 (+) True G55770
TU75192 lncRNA upstream 209334 31722624 ~ 31724049 (+) True G55771
TU75146 lncRNA upstream 284878 31648237 ~ 31648505 (+) True G55751
TU75142 lncRNA upstream 333812 31595829 ~ 31599571 (+) True G55747
TU75283 lncRNA downstream 4680 31939377 ~ 31944389 (+) True G55837
TU75295 lncRNA downstream 46217 31980914 ~ 31984290 (+) True G55846
TU75271 lncRNA downstream 90899 32025596 ~ 32025905 (+) True G55833
TU75379 lncRNA downstream 124730 32059427 ~ 32150545 (+) True LOC103024127
TU75396 lncRNA downstream 276553 32211250 ~ 32217411 (+) True slc23a2
XM_007229372.3 mRNA upstream 23572 31905217 ~ 31909811 (+) True LOC103029092
XM_007229341.3 mRNA upstream 64139 31867154 ~ 31869244 (+) True LOC103046271
XM_007229342.3 mRNA upstream 64139 31867154 ~ 31869244 (+) False LOC103046271
XM_007229340.3 mRNA upstream 69674 31857426 ~ 31863709 (+) True mak16
XM_007229334.3 mRNA upstream 90279 31831354 ~ 31843104 (+) True rnf10
XM_022670506.1 mRNA downstream 85649 32020346 ~ 32024618 (+) True nudt18
XM_007229348.3 mRNA downstream 85649 32020346 ~ 32024618 (+) False nudt18
XM_022670505.1 mRNA downstream 85893 32020590 ~ 32024618 (+) False nudt18
XM_022670516.1 mRNA downstream 124712 32059409 ~ 32150570 (+) False LOC103024127
XM_007229357.2 mRNA downstream 124712 32059409 ~ 32150570 (+) False LOC103024127
TU75269 other upstream 9288 31920820 ~ 31924095 (+) True G55831
TU74844 other upstream 1308337 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 1383322 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 3178566 28754030 ~ 28754817 (+) True G55218
TU74355 other upstream 3284270 28646064 ~ 28649113 (+) False asphd2
TU75290 other downstream 39984 31974681 ~ 31977419 (+) True G55844
TU75720 other downstream 1423517 33358214 ~ 33366012 (+) True G56160
TU75764 other downstream 1469877 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 1630131 33564828 ~ 33581368 (+) False izumo1
TU75801 other downstream 1643014 33577711 ~ 33581368 (+) False izumo1

Expression Profile