RNA id: TU75489


Basic Information

Item Value
RNA id TU75489
length 442
lncRNA type inter_gene
GC content 0.60
exon number 3
gene id G55988
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32463588 ~ 32466440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGGGGACTCATAGGAGACTGGTGGCCGtaggggagggagggagggcgAGAGCTGGAACTGCCTCCAGTTTGCTCTGCTGCTCCTGGTCTCCATATGGGGGCGTGCTCCACGTTGCCGTGGCTCAGagacttttctctttctctgtctcgatcccgctctctctccctctctcgctctctttccctctccctctctcgctcccgGTCTCGCTCTCGTTCTCTTTCCCGCTCCCgctctcggtctctctctcggtcccgctctcgctctctctccctctctcgttcGCGCTCGCGCTCAGATGACGTGGGGGTGCCCTGGAGTTTGCTTATATGGGAGCTTCCAACTGGTGAGATCGGGGACGTGGTGTAAGCTCGACTGGGGAAAGAGGTGGAGGTTCCTGGGATGTATGTAATCCTGTCCATCGGCGATGCAGATGCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75476 lncRNA upstream 14799 32447672 ~ 32448789 (+) True G55978
TU75475 lncRNA upstream 16785 32444733 ~ 32446803 (+) True G55977
TU75450 lncRNA upstream 158815 32304301 ~ 32304773 (+) True G55955
TU75396 lncRNA upstream 246177 32211250 ~ 32217411 (+) True slc23a2
TU75379 lncRNA upstream 313043 32059427 ~ 32150545 (+) True LOC103024127
TU75497 lncRNA downstream 23461 32489901 ~ 32493420 (+) True G55995
TU75508 lncRNA downstream 82731 32549171 ~ 32828819 (+) True G56003
TU75514 lncRNA downstream 184586 32651026 ~ 32718326 (+) True G56008
XR_002650073.1 lncRNA downstream 244523 32710963 ~ 32713543 (+) True LOC111192670
TU75550 lncRNA downstream 348568 32815008 ~ 32815843 (+) True G56040
XM_007229366.3 mRNA upstream 23577 32417679 ~ 32440011 (+) True rflna
XM_022670517.1 mRNA upstream 212579 32244560 ~ 32251009 (+) True LOC103025291
XM_007229351.3 mRNA upstream 221029 32221177 ~ 32242559 (+) True LOC103022464
XM_022670917.1 mRNA downstream 247109 32713549 ~ 32729908 (+) True LOC111192715
XM_022670521.1 mRNA downstream 862346 33328786 ~ 33360143 (+) True LOC103026160
XM_007237390.3 mRNA downstream 909579 33376019 ~ 33378613 (+) True LOC103024594
XM_007234214.3 mRNA downstream 1037175 33503615 ~ 33509374 (+) True gck
XM_007234212.3 mRNA downstream 1045071 33511511 ~ 33520503 (+) True LOC103039216
TU75290 other upstream 486169 31974681 ~ 31977419 (+) True G55844
TU75269 other upstream 539493 31920820 ~ 31924095 (+) True G55831
TU74844 other upstream 1838542 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 1913527 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 3708771 28754030 ~ 28754817 (+) True G55218
TU75720 other downstream 891774 33358214 ~ 33366012 (+) True G56160
TU75764 other downstream 938134 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 1098388 33564828 ~ 33581368 (+) False izumo1
TU75801 other downstream 1111271 33577711 ~ 33581368 (+) False izumo1
TU75803 other downstream 1112266 33578706 ~ 33581368 (+) False izumo1

Expression Profile