RNA id: TU75508


Basic Information

Item Value
RNA id TU75508
length 1994
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G56003
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32549171 ~ 32828819 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgaatatactgaatatagaccagattattccatcaatggattttttcttccctgatgacacaggAATtatccaagatgacaatgtcaggatttatggggctggaattgtgaaagaggaGTTCAGGgggcatgagatcatcattttcatacatggattgttcaccacagagtccagaccttaacttCATTGAGAATccttgggatgtgctggagaaggctttgtgcagcggtcagactctaacatcatcaatgctgcaagatcttggtgaaaaatgaatgcaacactggattgaaataaatcttgtgacattgcaaaagcttaataaactaatttcacAGCgagtgtgtgactttttttttttttggtggtgacttttttttttccaggcagCATATATGCTCAGTATCATGTATTTTACTCCAATTATATTATGTTGGATTGTTGTAGAAAAACTGGCGAATCTGGTGATCTGATAAATTTTGTATCACTGAACATTGCAGTCATTTTTTGTCCAATATTGTGCAGACCTAGTCTGAATGTTAAGCTTTCAACCCCAAAACATGCTTGTCTTTTTAGGACAGatataacaatataaattataatgtcAGTTTTGTAAAACAGGACCAGATAAAGGAAATCATGTAATTCCAACACCAAGACACGTTTAAAACAACACTGGTTAAAGTACAGCATCATAGAGGAAATGAGGAAAAATTAAGTCATTGACTACCAGGACACACACTGGATGTGTGTGCAGCAGAATGCTACAGACTGAAACCGTGTCCTTCTTTAGGAATGTCTGTTGTTGCAGCCCTTACAATCTTGCCAGCTTCACATTCATGTGCCTTTAAGAGGAAAACAAATAGATGGTTCATGTGTAAGCCAGGCCAGATGTTGTTAATCCATCAAGTCCATAGTGTAATACACTATAAGATCAAATGTATTCGTTGCACCCAATGCTGACACAtatgtgtaaatgcacacacatgcacagctgGTCTGTGCAGTTCCCGTAGAgatgtactgccaatagaatagaccTCTTTGGagcaaataaatataacatttattgACACCTTGCCCAATggcaggtgtgggctagagagGTATAAACCCCCCAGCACTAAGCTTTGGAGcagtaaagctgttttttttctggaatctggaatgatggtgctccatctaatACCTTTGGGATGACTTGGAGAGTTGAGTATGAGGATAGTCAGAGTGTTGATCATCCaacaacatcctgacctcactaacaatcttgttgctgaatgcgatcaaatcctcacagcaattctcCATAATGTTgttctccaacaaaagcaggataaagtatttttaatacccttgatttcagaagaatcaacaatgaataagcaggtgtcccaacacttttgtccacatagtgTAGCAGGTCCCAGGAGAGTGTGGCAGCGAAACAGGATACTCCTCGTCCTTCCTCAGCATCTTGTGTCACAGTTTAGTGTCAAGTAACAGACAGCAGTGGAATCCAGCAGTTACTAGAGTTACAAGAAGAACGTTTTATAGTTTATAACACTGAACAGAGCACATTCATCCAACACAATGAGTCTTGTGTTTTCATCTGCAACTTATTACTGTCTAAAACTCTGTTTATCTTCACAGAGCAAAGGCGGAGAGAGTGACATCAGAGCGCCGAGCGTAAGTCTGCTAGCAGCTGTGAAAGCCTGCAGTCTTTCCTTtccctcgctcgctcgctctttCCCCAGGCCTGTGAGAACTTCGTAAAAAGCTTTGAGTCACTGTGGAAAAAGAACGGTGGCTGAAACAGCCGGTGTGATTGAGCAGAGGTTTGACTTTCACTGTCCGTTTAAGGTCTTTGATCAGTAGCTGTCCGTCGTCCACTATGTGATGCTTAGACTGCTGAAAGGTCGATGCGATTGGCCGAGTTAGTGCTTTTGTCCCACGTGTGCATTTTCGTCGGGCTCACGCCCCCTTTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75497 lncRNA upstream 55751 32489901 ~ 32493420 (+) True G55995
TU75477 lncRNA upstream 78961 32449498 ~ 32470210 (+) True G55979
TU75489 lncRNA upstream 82731 32463588 ~ 32466440 (+) True G55988
TU75476 lncRNA upstream 100382 32447672 ~ 32448789 (+) True G55978
TU75475 lncRNA upstream 102368 32444733 ~ 32446803 (+) True G55977
TU75586 lncRNA downstream 321099 33149918 ~ 33177607 (+) True G56075
TU75699 lncRNA downstream 391707 33220526 ~ 33226416 (+) True G56147
TU75719 lncRNA downstream 520396 33349215 ~ 33349630 (+) True G56159
TU75774 lncRNA downstream 633591 33462410 ~ 33466117 (+) True G56201
TU75778 lncRNA downstream 652091 33480910 ~ 33483273 (+) True G56203
XM_007229366.3 mRNA upstream 109160 32417679 ~ 32440011 (+) True rflna
XM_022670517.1 mRNA upstream 298162 32244560 ~ 32251009 (+) True LOC103025291
XM_007229351.3 mRNA upstream 306612 32221177 ~ 32242559 (+) True LOC103022464
XM_022670521.1 mRNA downstream 499967 33328786 ~ 33360143 (+) True LOC103026160
XM_007237390.3 mRNA downstream 547200 33376019 ~ 33378613 (+) True LOC103024594
XM_007234214.3 mRNA downstream 674796 33503615 ~ 33509374 (+) True gck
XM_007234212.3 mRNA downstream 682692 33511511 ~ 33520503 (+) True LOC103039216
XM_007234213.3 mRNA downstream 683294 33512113 ~ 33520503 (+) False LOC103039216
TU75290 other upstream 571752 31974681 ~ 31977419 (+) True G55844
TU75269 other upstream 625076 31920820 ~ 31924095 (+) True G55831
TU74844 other upstream 1924125 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 1999110 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 3794354 28754030 ~ 28754817 (+) True G55218
TU75720 other downstream 529395 33358214 ~ 33366012 (+) True G56160
TU75764 other downstream 575755 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 736009 33564828 ~ 33581368 (+) False izumo1
TU75801 other downstream 748892 33577711 ~ 33581368 (+) False izumo1
TU75803 other downstream 749887 33578706 ~ 33581368 (+) False izumo1

Expression Profile