RNA id: TU75699


Basic Information

Item Value
RNA id TU75699
length 264
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G56147
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33220526 ~ 33226416 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accataccataaacgagagacagtccagagttcatacacaagcaatccagtatcagaggtaatccaagaggcagtagtgaaagcacagtccaggtcatacacaaacaatccaatatcaaaggcagaggcaagaatcggcgttgagtaaacaaaagcaaggtcatacacaaagtaactgagacaagagataagtaacgctttgtatgaggataacctacaatacgcggcgatgaagtctgtttggcgtgcacctttatagtgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75586 lncRNA upstream 42919 33149918 ~ 33177607 (+) True G56075
TU75508 lncRNA upstream 391707 32549171 ~ 32828819 (+) True G56003
TU75550 lncRNA upstream 404683 32815008 ~ 32815843 (+) True G56040
TU75514 lncRNA upstream 502200 32651026 ~ 32718326 (+) True G56008
XR_002650073.1 lncRNA upstream 506983 32710963 ~ 32713543 (+) True LOC111192670
TU75719 lncRNA downstream 122799 33349215 ~ 33349630 (+) True G56159
TU75774 lncRNA downstream 235994 33462410 ~ 33466117 (+) True G56201
TU75778 lncRNA downstream 254494 33480910 ~ 33483273 (+) True G56203
TU75790 lncRNA downstream 296687 33523103 ~ 33533957 (+) True G56213
TU75818 lncRNA downstream 382279 33608695 ~ 33609257 (+) True G56235
XM_022670917.1 mRNA upstream 490618 32713549 ~ 32729908 (+) True LOC111192715
XM_007229366.3 mRNA upstream 780515 32417679 ~ 32440011 (+) True rflna
XM_022670517.1 mRNA upstream 969517 32244560 ~ 32251009 (+) True LOC103025291
XM_007229349.3 mRNA upstream 977967 32221178 ~ 32242559 (+) False LOC103022464
XM_022670521.1 mRNA downstream 102370 33328786 ~ 33360143 (+) True LOC103026160
XM_007237390.3 mRNA downstream 149603 33376019 ~ 33378613 (+) True LOC103024594
XM_007234214.3 mRNA downstream 277199 33503615 ~ 33509374 (+) True gck
XM_007234212.3 mRNA downstream 285095 33511511 ~ 33520503 (+) True LOC103039216
XM_007234213.3 mRNA downstream 285697 33512113 ~ 33520503 (+) False LOC103039216
TU75290 other upstream 1243107 31974681 ~ 31977419 (+) True G55844
TU75269 other upstream 1296431 31920820 ~ 31924095 (+) True G55831
TU74844 other upstream 2595480 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 2670465 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 4465709 28754030 ~ 28754817 (+) True G55218
TU75720 other downstream 131798 33358214 ~ 33366012 (+) True G56160
TU75764 other downstream 178158 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 338412 33564828 ~ 33581368 (+) False izumo1
TU75801 other downstream 351295 33577711 ~ 33581368 (+) False izumo1
TU75803 other downstream 352290 33578706 ~ 33581368 (+) False izumo1

Expression Profile