RNA id: TU75719


Basic Information

Item Value
RNA id TU75719
length 213
lncRNA type intronic
GC content 0.26
exon number 2
gene id G56159
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33349215 ~ 33349630 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgaatcaaaccaatgactgaccatagactaatctaaaactggcataggcctctctgctgtaaaaaaaaaaaaaagaaaagaaaatcgaatcgaggatttagagacacccctaataattaaaaacttaaatactgtatgttatgGAAGTAGAATAgtataatttattacattttaaaaacatttaataaATAGATAAGCATAAAAATAAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75699 lncRNA upstream 122799 33220526 ~ 33226416 (+) True G56147
TU75586 lncRNA upstream 171608 33149918 ~ 33177607 (+) True G56075
TU75508 lncRNA upstream 520396 32549171 ~ 32828819 (+) True G56003
TU75774 lncRNA downstream 112780 33462410 ~ 33466117 (+) True G56201
TU75778 lncRNA downstream 131280 33480910 ~ 33483273 (+) True G56203
TU75790 lncRNA downstream 173473 33523103 ~ 33533957 (+) True G56213
TU75818 lncRNA downstream 259065 33608695 ~ 33609257 (+) True G56235
TU75870 lncRNA downstream 290165 33639795 ~ 33640074 (+) False LOC103037863
XM_022670917.1 mRNA upstream 619307 32713549 ~ 32729908 (+) True LOC111192715
XM_007229366.3 mRNA upstream 909204 32417679 ~ 32440011 (+) True rflna
XM_022670517.1 mRNA upstream 1098206 32244560 ~ 32251009 (+) True LOC103025291
XM_007229349.3 mRNA upstream 1106656 32221178 ~ 32242559 (+) False LOC103022464
XM_007237390.3 mRNA downstream 26389 33376019 ~ 33378613 (+) True LOC103024594
XM_007234214.3 mRNA downstream 153985 33503615 ~ 33509374 (+) True gck
XM_007234212.3 mRNA downstream 161881 33511511 ~ 33520503 (+) True LOC103039216
XM_007234213.3 mRNA downstream 162483 33512113 ~ 33520503 (+) False LOC103039216
XM_022670920.1 mRNA downstream 228963 33578593 ~ 33595818 (+) True izumo1
TU75290 other upstream 1371796 31974681 ~ 31977419 (+) True G55844
TU75269 other upstream 1425120 31920820 ~ 31924095 (+) True G55831
TU74844 other upstream 2724169 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 2799154 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 4594398 28754030 ~ 28754817 (+) True G55218
TU75720 other downstream 8584 33358214 ~ 33366012 (+) True G56160
TU75764 other downstream 54944 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 215198 33564828 ~ 33581368 (+) False izumo1
TU75801 other downstream 228081 33577711 ~ 33581368 (+) False izumo1
TU75803 other downstream 229076 33578706 ~ 33581368 (+) False izumo1

Expression Profile