RNA id: XM_007234208.2


Basic Information

Item Value
RNA id XM_007234208.2
length 4926
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC103037863
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33635152 ~ 33640077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacactgaacagagGAGCAGAAGAAACACcgaggagagagaaacagacggactaaaataaaaaagaaagagaaaaagtgagagagaagccTGCCCGGACTCCTGCCCCACTCAACACTCTGCACTGCCCGGCACGCGCGCTTTCTGATGCACGTTTCTACACGGGAATATTCAGCACAACCAACTCTTTACCTGCAGCTTTATCAACCAGGCACTTTGGGTACTTCAaactcttttaattatttatgtttccagggaaattgctttttttcttgttagtatttttctgttttaggtTTTGCACAAATTTGGCAACTCCCCCCAAActtttaaaatcatgattttagcTTGTTTGTTACTAGCTCGTGTTTAGACGCAAGTTGTTTTAAAGTTAAAGCATAAGGACTAAGGAAATGACAGCTGAGACTTTTGTTAATCCCTTAATAGGActataatttgtttaattagatCTATTTTTACAAGTAAGTCCCCAATTACACGCCCCCAGTTTACACAACAAATTCAGCTGCTAACATAAACAACCCAGATTTGAAATTTGAATCCAATTTTCTGGACAAAATAGCTTCAAGCGAGACGGATGTGTCAGCCTGTTTAGCCGTATAAGCTGAACAGTGTTGATCCATATCTGGGAGTATTTTTAGGCGTGTGGAGGAAGAGCATGGACTTAAAGAGAGGACAGGGGAGGCAGGAAGAAGCCCAGTCTTTGCAAGATGAATGCATCTAACCAAGGCTTCGGACAGCTGTGCTTCAGGGGGGTTTATATAGTCTGTTGTTGTGTGCAGACTTGACTCGACTAGATCGTTTACCCAGAAAGGACCTTTCCCAGAATCAATTCCCCTGGTTGAAAAGGGACAGCAGAGATTCAGCACACTTTGATTCGGCGGCAAAACAGGGCAGTGGCAGTCATGGAGAGTGCGTGTGCTATTCAAGAGGATCTTTCCAACATTAACAGCAGCAATCCTGGGGCTAACTCCCTCCCTTTGGTCAACCGGAGCATAAAACTCCCCCCGTACTCACCTGAAGCAACGGCAGCCTTCGCCACAGCCATCACGCTCATGATCGTCTTCACCATTGTGGGCAACATCTTGGTCATTATTGCTGTGTTGACCAGTCGGTCCCTAAGGGGCCCCCAAAACCTCTTCCTGGTGTCTCTGGCAGCAGCTGATATCCTGGTGGCCACCTTGATCATCCCGTTCTCACTGGCCAACGAGTTGATGGGCTTCTGGTACTTCAAATCAGTGTGGTGCGAGATCTACCTGGCCCTGGATGTCTTGTTCTGCACGTCCTCCATCGTGCACCTTTGTGCCATCAGTCTGGACCGCTACTTGTCCATTTCCCGGGCTGTGACATACGGAGCCCAGAGGACGCCCCGCCGCATCAAGTGTGCCATCTTGATCGTCTGGCTGATTTCGGCAGTCATCTCCTTTCCACCACTCCTGTCCATGAACAAGAAAAAGGGGACAGATGAGGCAGGGTGTCCACAGTGTGAGCTGAACAATGAACGTTGGTACATCCTTTATTCCACCATTGGCTCCTTCTTCGCTCCCTGCCTGATCATGATTCTGGTCTACATGCGGATTTACCAAATCGCCAAGCAGCGCACGAGGTGCCCTCCAGGGGAGCCGAGGAAGGAAATCCCTGCCAGTGCAGCCACCCCTCAGCACAAACCAAGGGCTCTTCAGAATGGTAGAGGAGATGGTGCAAGTACTCCTGGCACCCCTCAGGCAAAACCAGCTATGCCCAGACCTCCAACTCTCGCTGTACCTCAAGCGGAGTCTACGCAtacagagaagcagcagccagcAACTACCCCAACCACCAACAACCTTCTGCCCCCTCCTTCGCTTGGTACAGCATTGACTCCTGTTTCACCCTGTTCTCCTCCAGGaccttctccatctctctcacccTCCATCTCCTCCATCCAGAAGCAAGACTCCCAGCTCCCTGCTCCCAGTAAACCCAGCAggtggaagaaagagaaaaagccTGACAAGAAGCCTGACAACAACAATGGAGAAAGCTCAACATCTGATTCTGACACTGAGCAGGGAGGGGTGGGAACAGAGATGCCCATGACGCCCAGTGGTGAGCCCAGTGCTGGCATCCACTCACCTGCAACCATCCAGAAATACAGAGACATGATTGCCACAGCAAAAGGCACCAGGCTGGCTTCTCGGAAGTCCAAGCAAGATGGAACACCCAACTCAGCCCGGCGCAAGGCCATGGTGAACAGGGAGAAGCGCTTCACCTTTGTGTTGGCAGTTGTCATTGGCGTGTTTGTCGTCTGTTGGtttcctttcttcttctccTACAGCCTGCAAGCGGTGTGCCCTAGGACCTGTAACCTCCCAGAGCCCCTCTTTAAATTCTTCTTCTGGATTGGCTACTGCAATAGTTGCCTCAACCCTGTCATCTACACCATCTTCAACAAGGATTTCCGCAGAGCATTCAAGAAAATACTCTGCAAAAACACCAAGGGTACATTCTTCTGACTGACCGAATGTCTCAGATAGGCAACTGACGGAGGTACAAGAACCTGGAAAACTGTGTACTGTACGATTTTTACAAAGCACAATGACTTcattttaacagtgtaaataaGGGGCTTTTTGTTTGGCCCTGCAAATCAAGAACAGCATGCAATGACAAAGCACATTTTCATGTGTGTCAAATGACAGTGACGTACCTTTTTATGGGGGCAAATTCCTCAGAATATGGATTTCTGGACTTTTTGCAACATAGTTTTGCAACATACTAGGACTCATCAAAAACCAGACGCACAGTAGAGAAAGAGTGAGCGAGGGAGATCTCAGCGGGACCACAAAAGCCAGAAACTGTCCTGTTTTATGGAGGTTATCGTGCACCTGTGAGGATAACGAAGTAAAGGGAACACAATGTAATAGTGTTTTCCCTTTTTTGCGCCTTTCTAAGAATATCTGCCCTCAGGGATAGCACAAGCATGGGTTTCTGTAGGGATTTCAATCCAGCCAGAGTCTTATtttatccccacagaattatcCCTCAAACATTACAAAGACACAAATACACAGATCCTCTTCACTGATACTTGGTGAGCTTTAATTCTAGCGAAGGAAACAGGGGGATGGAAAATGCCCTTGCGACGCACATTGCCGGGGGCCATGCGTATCGAATGAATAGATGTTGGAGCCTAAAAGCTTTTGGATTCAGATGGCACCAGTGGGGGAAGATTCCCCTGCCATGCCCATCTTCTCTCCCCTCCTAATGCAAGCATGCTTACTGAATACAAAGCACCAACCGTGAGGAAAGACTTCTTCCGTGAGGAAAAGCTTCTTTGTCTATCTTACTCCAGCAGGTTATCTGGGCTGACGGACGCTCAGCCTGCTTAGTAATCTCGCGAATGTGGATGCAACTGCTTTGAGGTAGAAGTtaaggaccaaaaaaaaagaaaaactgaacaTGGAAAAACTTGTCATGGACACAGCTTTTGAGAATCTGTTCCTAAACTGGCCCCTAAGACTGATCTTGACTGTGTTCTTAAAGATGCAACCATAGCAAAGGTGTTACTAACTGTGGTGACCAGTGAATCAGGGCAATAAGGACCCTTTCTAATATATCTGGaattgttggtttgttttgggattttttttttttttgggttcacttttcacttttctctaaaaaaaaaaaaagaacttgagATTTCTGCCATAAACTAAAATACTATTGCACCCTGTAAACTGTTAATCGTTCAGCAGGGTGATACTTTGGGACTAAGGGCTGATGGCAATGACACTTCCTATTTCATTCTCTGGTCGCTGTCACTTATTTGATGAttgttgtgtgtgagagagtgtgtatgatgaacgtgtctgtgtgtgtgtgtgtgtgtgtgtgagagaaaactGCACTTATTAACTGACTGAGCGAGTGTTGTGTGCGACTGACTCATGCGCGAATGCCGATGTGTGCTGCGGATGACAGAGTGTGCGTATGGGCAGGCATTGTACGGGgaggtttattattattatttttttgttttttttctgcggTATATCTTTCGGCCCGTGCAGTGCAGAGACCCATCATCCCCCTCCCCATTTCCCACTTCACTGGCAGTAAATGAGTAAATGGACactatgtgtttgagtaaaacaaagGTCGGCATGCCTTCTCTCTGCCAGCTCATGCCAATGCCTTTAATCCAGCTCCTTCTTGTGCCAATGCTGTTCCATGTGTGGCTGCTAAACCGTGTCTTCTTATACAAACAGTacagaataatgttttaatggttttaGGCCCAGTGATCTTATGTTTTTGGTGAATGTGCAGGTTCAGACACGGTTCGGTTGTTAGGCCTTTGGAGATTAAAGGTTTAAAGGTTAGCGGGTCGAAATGTTGTAACAATGTCGAGACAATGTTGAGAGCTGTGAACAATTGAGCAATTTTGGTTttgtactatttatttattatttgcctgtttctgtttttgcccatatatatacatatttattaacgCCAGTTtgttatcatgcattctttgtttctttgtttgtaagTTGATGCTGGGGATGCGAGGAGGAGGGGAGGGGTTGGGGGTTGGAGCAGGAGATGGGGCGGGGCTAAAATCCAAATTGCATATTTAAAATTGttgtgtacaaaaaaaaaatcctcgaACTTTTAAAGGCTATAACTGGTATATACATACAGTCATTTTACAGAAAAGTCTTAAACgattgttacctgacctgaatgCATCTGTttgggttttacagtgttgGAATGTTGCGTTTGGACTGCACTTTTCCAAAGCTTTGCAAAGTTTCATGATCCAGATCCGAATGGGTTCCTCCTTTCTTAGTGTTGTCTGgattgctcttttttttctccactatTTGAAAAATAAAGCCACTGAAATATG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0065008 regulation of biological quality biological_process
GO:0044057 regulation of system process biological_process
GO:0016020 membrane cellular_component
GO:0004935 adrenergic receptor activity molecular_function

KEGG:

id description
K04139 ADRA2B; adrenergic receptor alpha-2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75818 lncRNA upstream 25895 33608695 ~ 33609257 (+) True G56235
TU75790 lncRNA upstream 101195 33523103 ~ 33533957 (+) True G56213
TU75778 lncRNA upstream 151879 33480910 ~ 33483273 (+) True G56203
TU75774 lncRNA upstream 169035 33462410 ~ 33466117 (+) True G56201
TU75719 lncRNA upstream 285522 33349215 ~ 33349630 (+) True G56159
TU75872 lncRNA downstream 2136 33642213 ~ 33642422 (+) True G56278
TU75877 lncRNA downstream 86841 33726918 ~ 33727139 (+) True G56283
TU75886 lncRNA downstream 110825 33750902 ~ 33756692 (+) True G56289
TU75888 lncRNA downstream 110825 33750902 ~ 33756692 (+) False G56289
TU75889 lncRNA downstream 110825 33750902 ~ 33756692 (+) False G56289
XM_007234209.3 mRNA upstream 10400 33619314 ~ 33624752 (+) True LOC103038175
XM_022670920.1 mRNA upstream 39334 33578593 ~ 33595818 (+) True izumo1
XM_007234212.3 mRNA upstream 114649 33511511 ~ 33520503 (+) True LOC103039216
XM_007234213.3 mRNA upstream 114649 33512113 ~ 33520503 (+) False LOC103039216
XM_007234214.3 mRNA upstream 125778 33503615 ~ 33509374 (+) True gck
XM_015600798.2 mRNA downstream 706516 34346593 ~ 34377925 (+) True nr6a1
XM_015600794.2 mRNA downstream 769271 34409348 ~ 34431835 (+) True LOC103026546
XM_007231496.3 mRNA downstream 863037 34503114 ~ 34511684 (+) True fgf17
XM_015600796.2 mRNA downstream 864641 34504718 ~ 34511684 (+) False fgf17
XM_022670526.1 mRNA downstream 866021 34506098 ~ 34511684 (+) False fgf17
TU75802 other upstream 53784 33564828 ~ 33581368 (+) False izumo1
TU75801 other upstream 53784 33577711 ~ 33581368 (+) False izumo1
TU75803 other upstream 53784 33578706 ~ 33581368 (+) False izumo1
TU75764 other upstream 228502 33404574 ~ 33406650 (+) True G56193
TU75720 other upstream 269140 33358214 ~ 33366012 (+) True G56160
TU75961 other downstream 865378 34505455 ~ 34511642 (+) False fgf17
TU76054 other downstream 1073141 34713218 ~ 34751563 (+) True G56414
TU76153 other downstream 1586419 35226496 ~ 35239100 (+) False ikbkb
TU76213 other downstream 1780710 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 2316027 35956104 ~ 35963319 (+) False G56701

Expression Profile