RNA id: TU75969


Basic Information

Item Value
RNA id TU75969
length 873
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G56349
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34408840 ~ 34421201 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcAGGGTAGTCAACCAATCAGTACCTGTTTCTTTTGAAGCAGCGCGGCCGCGGTCGAATACAAAACCCAGGAGGACCGTAAATtaactggaagttaactcgacagtgtcaGCAGTGTCACCATTGATGTCGCGAACAACTAGACAACGTGTGAAAACCATGcggagcgactccatctccgCTCCTTGAAGAATATGCAGCTTCTTGCCCATTCAACAATGGAGAACAGTGTCTGGTCTGCCATCATGCACAGCAAGTTGAAGGGGCGGGGTTTGTCCAGTTTACCACGCCCACTCTGCTCCTGATGCAGAGGAGCTGGACGCCTCTTCATTGGATTATCACCCTCATGTGACAGCCTCCAAgacgatgatgaagatgatgttgCTCCCTCTGGCACGCTGGAGTTAACACAGAGGATGGTTAACCCTTAAAGTGATGGACTTACGTTTATATTCACTCATCAAATTAATTCGAATCAGTTGAATTAACAGTTAATGAGTTGGATTAACTCTAGTATTGGAATGTTggattgcattatttttttagtacaaGATAAAATGTAATAAGGGATCAATCAGGTCTTTCATGGCACAATTTAGTTAGATTTTTCACTCTAATCTTGCTTAGCTAAATTAAATCGAGCGGTATTGGTAGGATACTCATTGTTAGATCAAACAGtagtttttaatgaacttcTATAAAGTCGGATTACATTTTATAGAATTAAATTAACGTTTCAAAGTGCTGAATAAAATACCCGCctagttttaaataaaacaaatcgtACATTAGCTCTTATATTGTTGGTCTTAATTTGAACTACATTATAGAACACTGGTGTTGTTAAATAAACTCTgctaatattcatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75950 lncRNA downstream 5322 34397594 ~ 34403518 (-) True G56336
TU75943 lncRNA downstream 29029 34377103 ~ 34379811 (-) True G56332
TU75945 lncRNA downstream 30424 34377103 ~ 34378416 (-) False G56332
TU75946 lncRNA downstream 30917 34346112 ~ 34377923 (-) False G56332
TU75947 lncRNA downstream 43489 34346316 ~ 34365351 (-) True G56333
TU76219 lncRNA upstream 288045 34709246 ~ 34710923 (-) True G56507
TU76224 lncRNA upstream 453363 34874564 ~ 34876645 (-) True G56512
TU76233 lncRNA upstream 492045 34913246 ~ 34913968 (-) True G56519
TU76249 lncRNA upstream 550048 34971249 ~ 34991135 (-) True G56532
TU76265 lncRNA upstream 614734 35035935 ~ 35036274 (-) True G56548
XM_007234217.2 mRNA downstream 844133 33536304 ~ 33564707 (-) True npc1l1
XM_007237394.3 mRNA downstream 918890 33485649 ~ 33489950 (-) True myl7
XM_022670523.1 mRNA downstream 926076 33462386 ~ 33482764 (-) False LOC103025548
XM_007237393.3 mRNA downstream 927212 33462386 ~ 33481628 (-) True LOC103025548
XM_007237392.3 mRNA downstream 1002168 33404530 ~ 33406672 (-) True LOC103025241
XM_022670525.1 mRNA upstream 18869 34440070 ~ 34468155 (-) False adgrd2
XM_022670524.1 mRNA upstream 18869 34440070 ~ 34468155 (-) True adgrd2
XM_007231494.2 mRNA upstream 114095 34535296 ~ 34539056 (-) True LOC103025191
XM_007231492.3 mRNA upstream 157616 34578817 ~ 34586862 (-) True LOC103024553
XM_007231491.3 mRNA upstream 180211 34601412 ~ 34617121 (-) True LOC103024249
trnaa-agc_13 other downstream 1048399 33360369 ~ 33360441 (-) True trnaa-agc_13
XR_002650076.1 other downstream 1231190 33149074 ~ 33177650 (-) False LOC103023237
TU75652 other downstream 1606687 32781276 ~ 32802153 (-) False LOC103021360
TU74381 other downstream 5808330 28598278 ~ 28600510 (-) False LOC103031600
TU74384 other downstream 5984885 28417733 ~ 28423955 (-) True LOC111192657
TU76301 other upstream 672350 35093551 ~ 35108393 (-) True LOC103038119
XR_002650079.1 other upstream 864221 35285422 ~ 35293421 (-) False acaa2
TU76360 other upstream 875145 35296346 ~ 35299589 (-) False c6h22orf39
TU76403 other upstream 999629 35420830 ~ 35422149 (-) False G56638
TU76749 other upstream 1345569 35766770 ~ 35767677 (-) True G56887

Expression Profile