RNA id: TU76051


Basic Information

Item Value
RNA id TU76051
length 1350
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id G56411
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34707496 ~ 34711475 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACACACTTCAAAACTGGAGGGGTAGTTGCAAAGGATTCTAATAAATTGCTTGTACTATGAATTAAAATTCAAAAACTACCATTAATTACACGTAAGctttaagaatttttttttgttccttctTATCTTATTAAAGAAGTTTTCAATACATGTTTACTTTATACAAGTAGTTTGCAGGATAACTGTATCAAATAAGAAACCAGTTCCAAAGTAGACTttacaaaaaatacactgtttcatagagagacacagaaaaagCGGGTGATCAAATATTGACCAATAATATTCATTTCCTTTTCACTTATCAAAAAAGTTAACCTGACATCTATTTGAAAAAGGTAAAAAGCAATGTACAGCACGTTTAAAAGGGCAGCGAGAAAACGAGGGAGGATTTCCGCTTCCTGCTGGTTCAGTCGGCCGATTTGGTTACCAAGGAGAGAGGCTGCGACTGGAACAGGGCATGATGGGAGTGCAGGGCAGCCTGGTGGAACGGGGAGGGCGGGGACAGGAGGGAGTGGTGCAGGGAGGTGAAGGGGATTGGCCGAGAGAGGAGGGGAGGAGTGGACTGGCTGGCCGGGGAGccagtggagagagagatggcggggtgagaggaggaagaggatgcTGAAGAAGacgaagaggaggaagaggaggagatggaggaagatgaggaggatgaAGGTTTGGAGATCAGAGAGAAGTGAGGGTGATGGCGATCGGGTTTGGTGGTGAGGGACAGCGGCTGGGCCTGCTCGGAGTGTGTGGGCGCTGGGGCGGCGGGGGAGGCCAGCGCGGCGGAGGGCGTGGCCGGGGAGTCCAGCATGCTGCCGTGAGATGAGGCCGGGCTGTCGATCATTTTCTCCTGAGGGAGGTACTGCACACAAGGCTTCTTGTTCCGCGCTGAGAAATCTTCTACTGTTGAGTCTGGCTTAttatctctcttcctcttcttccgcTTGccATAGTTATCTCGTGCGGACCAGCCGGGGTAGAGCTGTGAGTGCAGCTGCCGCTCTTTCCTGGCCAGCTCGTAGTATTTGGCCTGCTCCTCTCGAGACAGAGAGTGccaCCTTCGGCCCAGGATCTGGTTGATGGCAGCGCTCTCTTTAAGCGTGCATTCAGCCACCACTTTAGCTCTCATCTCCTTCATGTAGAGCATGAAGGCGTTCAGGGGCTTCTTAATGTGAGGCTTCTTGTGTGTGTGAAGTGGGGCTCAGGTCTCCGTTGGGCTCCTGTTTAATGGCAGGTGAGACGATGGCAGGATGAGGAATTCCTGTCTGATGGAGACTGTGAGGATGATGAGGCACCATGTGAGGAGAAAAGCGACTGGACACCAGACtgcagtggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75995 lncRNA upstream 90383 34608634 ~ 34617113 (+) True G56370
TU75993 lncRNA upstream 103518 34601453 ~ 34603978 (+) True G56368
TU75987 lncRNA upstream 120669 34584172 ~ 34586827 (+) True G56367
TU75984 lncRNA upstream 161559 34545687 ~ 34545937 (+) True G56364
XR_002650078.1 lncRNA upstream 207873 34477890 ~ 34499623 (+) True LOC111192673
TU76063 lncRNA downstream 163086 34874561 ~ 34876645 (+) True G56419
TU76077 lncRNA downstream 274606 34986081 ~ 34989285 (+) False LOC103047498
TU76089 lncRNA downstream 379261 35090736 ~ 35093338 (+) True G56437
TU76100 lncRNA downstream 399566 35111041 ~ 35168021 (+) True G56444
TU76101 lncRNA downstream 403510 35114985 ~ 35115756 (+) True G56445
XM_007231486.3 mRNA upstream 41498 34639816 ~ 34665998 (+) True LOC103022994
XM_007231493.3 mRNA upstream 174162 34530300 ~ 34533334 (+) True LOC103024866
XM_007231496.3 mRNA upstream 195812 34503114 ~ 34511684 (+) True fgf17
XM_022670532.1 mRNA downstream 136604 34848079 ~ 34870296 (+) True LOC103022237
XM_007231481.3 mRNA downstream 168345 34879820 ~ 34923018 (+) False dbnl
XM_007231480.3 mRNA downstream 168346 34879821 ~ 34923018 (+) True dbnl
XM_022670534.1 mRNA downstream 168346 34879821 ~ 34923018 (+) False dbnl
XM_007231483.3 mRNA downstream 168346 34879821 ~ 34923018 (+) False dbnl
TU75961 other upstream 195854 34505455 ~ 34511642 (+) False fgf17
TU75802 other upstream 1126128 33564828 ~ 33581368 (+) False izumo1
TU75801 other upstream 1126128 33577711 ~ 33581368 (+) False izumo1
TU75803 other upstream 1126128 33578706 ~ 33581368 (+) False izumo1
TU75764 other upstream 1300846 33404574 ~ 33406650 (+) True G56193
TU76054 other downstream 1743 34713218 ~ 34751563 (+) True G56414
TU76153 other downstream 515021 35226496 ~ 35239100 (+) False ikbkb
TU76213 other downstream 709312 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 1244629 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 2293798 37005273 ~ 37005798 (+) True G57066

Expression Profile