RNA id: TU76105


Basic Information

Item Value
RNA id TU76105
length 2215
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G56448
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35133583 ~ 35136048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTAAACTTTATTTCTTCATCTGTGTGCAtgactcacactctctcacacacacacacacacacacagtcattttCCTCCTAACAGGCTCCAGAGACACCGCCCCACCTGCGTCTCCTAGCAACCAGAAACAGCTGCTATCAGACCTCCTGTTTTTGGGTTTTGTCTTTtcctaaaaaatattaatgttttttctgcATCATCACACTGTAAACATTATATCACTTATGGCTTCAGTAACTTACttcatatttactgtatgtgaCAGAATGGGATGTTATAGAGCTGAGAGGTGCAGTAGTATTGTGAGAGACTGTAATGAAGCTCATCAGAAGCAGAAACTGCAGGAGAAGATTTCAGCTGATCGATcacagatacagatatagaGCTGAACGATACTGGaaacattttacactgttaatgtttttttttttgacaatatatattgcaatattaaacaatgcagggtaCATGACATCAGCAGCCCCGCCCACACCCGAGCGCTGCCTCTTCTccagaccaatcaagagctgagtcagcgctgagCTCTCAAAcccagaggaaaacagcaaaacaacagtaatctgctctttaatcagcatttaaatgtctttttaaaaggtgaataagagcgtttgtttttctggaattaaaagtgtgaattcagctgtaactggaaatatctgcactgataaactgtgctggactgaggtgcacagctttccacacgtttaccatgtggatggaggccatgcggttacttCCTGTTTACTCCTTCCCCTCCCcctcgcgcttctcaggcagcagcagtctgtcactcacacagacacagagacagcgctgtgtatctacttcttgtgtcaagaatcaaaacataaaacatgacgtgtttaatttaaatgctttaagtgacatcacacatcctgcaatgtgattatTGCGCATGTGCACATCGccatgacgatgcttaaaccatatatcgtgcagctctaGACAGATATATAACTAACTGAACGTCTGATTGATATCTGTGGTCTGACCGTAGTTGTGCTCAGAGAGGCCTGTAGGTCGTACCTGTGGTGAATTCAATACTATACAGTCCTGCAGTTCAGGACGATCCAGTTTCAGGAATCTTTCATCACACTGCTGTATCGTCCAATCAAATCAATCGAATTTATTTATacagcgctttttacaactgatgctgaAACAAATCAGCTTTACTGAAACGTGGAAGCAGGAGAATAACACTGAGTGAACGTGAACTCAGTACTTTTATCTCACTAATTACAACTAGAGCTGTGAAACAAACCTAGTTTGAAGAGTagtgtaaaattatatattaacaaaAACGCAGAGCAACTTCAGACATTAAATACAGAACTGCTGCAGAattaaaactaaacacaaatcttcaaaataaaagtcagaaaATGCAGAAGAACAACAAAAAGAGAACAGTGAACACAATTACAGATCACTAGTGTCGTCTGCTGTTCAGCCTGTTTTCATTCAGGTAGTCTATCTGATTTCTCCAGTGCTGTAAATTCTGAGGTGTTGAAGTTAAACCTGCTGATGTTTCATCTCTATAAAACTAACAATCTAAATATTACAGGCTGTTAGATATGCTGAGTTAGtgtggagagggagagagagagtgagagagagagagagagagtgagagagagagtgtgtgagagagagagagagagagagagagaaaatgagagagagagtgagagagagagagtgagtgagtgagagtgtgagagtgagagagagagagagtgaattaTGTAACTGAGGGAGATTCAGTGCTGCTTTTTGCTCGTTTGTTAGTTTAGGTTCAGTGTCTCCATCATTCTGGACTGAGAGCGAGACCGAGCCTCCGTCTGGCGGGCGGTGGGTCTGGAGTGGAGATGGAGGTTCAGCAGGTCTTTAGGTGGAGGAGAGTCAGGGGTGGAGGTTAAACCCGTAGGCTGGAGAGGAGAATCCAGCAGCAGTAAAGCCGTAACTGGAGAACACAGCCTGAGGAGCTACAGGAGACTGACCAGCAGCTAACATCAACTGCtgacctgtacacacacacacacacacacacacacatatacacactttaTTCAGACCTGCAATTtataactatttaaaataaacaatttaaatgaataaagcatCTCTTTTTCCTGATCTGGATATTAGATATTATTACTAACCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76101 lncRNA upstream 17827 35114985 ~ 35115756 (+) True G56445
TU76089 lncRNA upstream 40245 35090736 ~ 35093338 (+) True G56437
TU76077 lncRNA upstream 144298 34986081 ~ 34989285 (+) False LOC103047498
TU76063 lncRNA upstream 256938 34874561 ~ 34876645 (+) True G56419
TU76051 lncRNA upstream 422108 34707496 ~ 34711475 (+) True G56411
TU76122 lncRNA downstream 35850 35171898 ~ 35176979 (+) True G56459
TU76134 lncRNA downstream 61397 35197445 ~ 35199268 (+) True G56465
XR_002650116.1 lncRNA downstream 81843 35217891 ~ 35218782 (+) True LOC111192732
TU76149 lncRNA downstream 110753 35246801 ~ 35249651 (+) False ikbkb
TU76151 lncRNA downstream 110753 35246801 ~ 35272528 (+) False ikbkb
XM_007241248.3 mRNA upstream 44398 35083719 ~ 35089185 (+) True snap29
XM_007241246.3 mRNA upstream 50291 35039169 ~ 35083292 (+) True LOC103037259
XM_022670533.1 mRNA upstream 50291 35039169 ~ 35083292 (+) False LOC103037259
XM_007241247.3 mRNA upstream 50291 35039170 ~ 35083292 (+) False LOC103037259
XM_007231478.3 mRNA upstream 114858 35015117 ~ 35018725 (+) True LOC103047196
XM_007229137.3 mRNA downstream 55756 35191804 ~ 35195665 (+) True LOC103034472
XM_022670542.1 mRNA downstream 90437 35226485 ~ 35247343 (+) True ikbkb
XM_007229136.3 mRNA downstream 123872 35259920 ~ 35265350 (+) True enkd1
XM_022670547.1 mRNA downstream 129920 35265968 ~ 35274621 (+) True polb
XM_007229129.2 mRNA downstream 140031 35276079 ~ 35278890 (+) False LOC103032256
TU76054 other upstream 382020 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 621941 34505455 ~ 34511642 (+) False fgf17
TU75802 other upstream 1552215 33564828 ~ 33581368 (+) False izumo1
TU76153 other downstream 90448 35226496 ~ 35239100 (+) False ikbkb
TU76213 other downstream 284739 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 820056 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1869225 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4908605 40044653 ~ 40046467 (+) True G57664

Expression Profile