RNA id: TU76134


Basic Information

Item Value
RNA id TU76134
length 1803
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G56465
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35197445 ~ 35199268 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAACAgaatataacatgttataacatCTGTAgtgataaatagataaatatgatCTTAAAAAGCAGaacattatgaaaaaatatggaGAAAAGCAAAAAGCACCGGGACAAAAAGtacaatgaacacacacacacacacactgacacacacacacaggttataTCTGGGATCAACCCAAAtcaatgtcTGTGTCCGATCCTGCAGATTCTTAGTGCTAAAAAAGGTTttagaaaagaataaaacagaagtttttatgtaaattaattaacattagtttttacaatttacaggaaaaatactacatttccactacatttatatttctctgcattttatttcatgtataataataaatatttacatatgaaAAGGTCTGTAGCATTTCCATCCTGAATATGTACTGCTACATCCCACTACTGCACAAAAACAATCATCCCTTTTACACCAGTCTATAGTTTAACACactctcttctcattcagtgatttaactttattttatttaatgtattttctacattaatctcctgatctaaagctgatgaactgagattaaggtgatttgaggtgatttaactgggatgagctggataaaggtctttaatattaaatttataatgtagaaaaatcatagaaagaaagaaacacactgaatgagagagagagaagaggagtgTGACggtttgactggtgctgtatttCTGTAGGACTCTGGTGATGAAGAGCTGCCTGTTTTTCACTGGATGAACGAGAAGCACCGACACGGTTTTACACTCTCACTGGGTCAGAGGTTAAAGGTCAGAATTAAAGGCTTTTAAACACTTTCATCTCAGTTTCATCAGGATACAGAAGATCACTGTGTGTTATAAACTGAAGCGAGTAGTGAAACGTGCTCACAGGAGGCCTGTCACTATAacacttttcactttttaatgGACGATATGTTGATCCTCAGCTGATTTACTGCGATAAATTATTTTATGgtaatttttacataatttaatgGAATtggaatattacattttttatatattctacataaataaataaaataaaaacactattcTAAATCAAATCAATGTAACAGCTCAATATCGTTAAAGGGATCTCCTCTCAACCTGCTTGGAGTCGTGGATCAGAGGACTTTTATCATATAAAGAGAGAGCTGTGGTCTGCTGTGCTGTAAATATGGATCAGGATCAGGTTAGAGATGTTGCTGTGCTGAAGCTCTGGCTGAGTTTGAGTCAGATAAGGCAATAAATAACTGAATGATGGATTGAtcacatatatatatcagaACGAGCTGTATAACGAGCTGTCTAATTAGTTCTCTAACGAGCTGTGTAACGAGCTGTGTAACGAGCCGTTTAAGGAGCTGCTGGATTgaacagtgtgaaagacttcagcagcagtaaaactgcaCTGTGTGTCTGAGAGCAGAGGAGATAATAAAGCAGCGCAGTTGTTTATTTATCGTGTGATAAATTGATAAAGTGATTATGATGACAGGCCTGCTGTTACACATTACTCCTAATACTCCAGACTGCGGCGGAtcctgatctcagatcagcagTTCTGGATTCAATGTAACGGAGAGcatttcttcctcctctttgaTTTCGAGTCTCATTAGATGTTTTTATCTGTTGGATCTGATTTTGCTGCTGATCCaggataaataattaataactcGGGTATAAACTCCCGGCGTGTCCTTCTTCCCACATCCATCCCCCCAACTGATCAACCCCACCAGATTCATCCTGCCGTCCTTCTGACACACCAGAGGACCTCCAGAGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76122 lncRNA upstream 20466 35171898 ~ 35176979 (+) True G56459
TU76100 lncRNA upstream 29424 35111041 ~ 35168021 (+) True G56444
TU76105 lncRNA upstream 61397 35133583 ~ 35136048 (+) True G56448
TU76101 lncRNA upstream 81689 35114985 ~ 35115756 (+) True G56445
TU76089 lncRNA upstream 104107 35090736 ~ 35093338 (+) True G56437
XR_002650116.1 lncRNA downstream 18623 35217891 ~ 35218782 (+) True LOC111192732
TU76149 lncRNA downstream 47533 35246801 ~ 35249651 (+) False ikbkb
TU76151 lncRNA downstream 47533 35246801 ~ 35272528 (+) False ikbkb
TU76152 lncRNA downstream 47533 35246801 ~ 35254670 (+) False ikbkb
TU76155 lncRNA downstream 54050 35253318 ~ 35254002 (+) True G56479
XM_007229137.3 mRNA upstream 1780 35191804 ~ 35195665 (+) True LOC103034472
XM_007241248.3 mRNA upstream 108260 35083719 ~ 35089185 (+) True snap29
XM_007241246.3 mRNA upstream 114153 35039169 ~ 35083292 (+) True LOC103037259
XM_022670533.1 mRNA upstream 114153 35039169 ~ 35083292 (+) False LOC103037259
XM_007241247.3 mRNA upstream 114153 35039170 ~ 35083292 (+) False LOC103037259
XM_022670542.1 mRNA downstream 27217 35226485 ~ 35247343 (+) True ikbkb
XM_007229136.3 mRNA downstream 60652 35259920 ~ 35265350 (+) True enkd1
XM_022670547.1 mRNA downstream 66700 35265968 ~ 35274621 (+) True polb
XM_007229129.2 mRNA downstream 76811 35276079 ~ 35278890 (+) False LOC103032256
XM_007229132.3 mRNA downstream 94655 35293923 ~ 35296002 (+) True mrpl40
TU76054 other upstream 445882 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 685803 34505455 ~ 34511642 (+) False fgf17
TU75802 other upstream 1616077 33564828 ~ 33581368 (+) False izumo1
TU76153 other downstream 27228 35226496 ~ 35239100 (+) False ikbkb
TU76213 other downstream 221519 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 756836 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1806005 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4845385 40044653 ~ 40046467 (+) True G57664

Expression Profile