RNA id: TU76149


Basic Information

Item Value
RNA id TU76149
length 1437
lncRNA type sense_over
GC content 0.44
exon number 5
gene id ikbkb
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35226485 ~ 35272528 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCTCTTTATTGGGTTCCAGAACAGATCAGTTTATCAATTTCTTAAATCTAGTCATCATCCAGCACAACACAGAATTAAAcatgaagaaaaagagaaaaacataaaGAGGAAACGCTCCCTTTATCTCTCCAACTCCTACTGAAACACAGACGGGCCAGTGAAGAAATGATGATtaaataatgtgtgttttttATTTTTACACACAGAGATATGAAGAGACGGGGTTGGACGTTTTTCAGATGAGGATTCCCTTAAACTTTGTTCTCTAAACAACAGGATACTGAAGATAGAGCTGCGCGATAAATCGCTTTAGTATCGATATCCCAATGTGCAATgttattacactttttttttactttttttgctgcTCAATACAAAGAAATATCGaccaaatataatttattttactcaaaatattgtgaCATGTAGGAACAATGCAAAATTTAAATcacagaacaacaaaatatcacaatttattgtaatttttccccaatatcgtgcagctctaACTGAAGATTCACTCACACCAGACTGTTATCTTGTCTGATACTGAACAGTGAATCTGCTGTGATCAGATTTGAAATTAAACACACGAACATCATCCTAAACAATCCAACATCAcacagctttataaaagaacctTAAACCTTCAGGACAGAGGAACTAAAATCACGTTTATAATCAGAAGGTGGAGTGGATGGTGAGACGTGTGAGGGGGGGTGCAGCGCCGGTCACGTGACTGACTGCAGTCTGAACCCTGTTGTAGAGTAGACTGAGAGTCAGAGACCTGAAGATGCAGCTATAAAGGTGGAGTCTGAGGGTGGAGGTCTGTATGATCGGTCGTGTCGTGGTTTCTGTCTGTTCCTCTCgtcttcctgctgctgctgatctctctctctctctcttcacaccTCCAGCTCGAAGCCCATCCCCACCTTGTGCCCCCCAGCGTTGAAGTTCTTAGCATCAATCAGAGCAGAGAGAGTGAGCTtcacacCTGGTCGCAGAGCCTGTGTGTATCCCACTCCAACCAGACTAGCATTGTTTACTTTAGcAGAGACGGACGCGTCCTTGTCGAGTTGGTACTTAGCGGCGATGCCGAAGCGCGTGTTGTTGCTGCCGGCCGTCCACGCCAGATTCACCGCCGTCTCCAGCTCACTGTTCACCTTCTGATAGATAGAGCCTCCAAACTCCGTTCCATCATTACGTTGGTGTGCAGCTGGAAATCTCCAGCCTTGTATCCCAGAGCGAAGTTGTTCTGGgccagtttggattttgccgtATCAAACGCCATCTGATACCCGGCGAGCCACCCCTCGTACCCCAGCACTGCTGCAGCGTGAACCGTAGGACCCGCCAGATCAAAATCTATATCACAACCTACATTCATATACTCCCGCTTATAACCCGTCTTCAGCTTAGCACTCTTCTtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650116.1 lncRNA upstream 28019 35217891 ~ 35218782 (+) True LOC111192732
TU76134 lncRNA upstream 47533 35197445 ~ 35199268 (+) True G56465
TU76122 lncRNA upstream 69822 35171898 ~ 35176979 (+) True G56459
TU76100 lncRNA upstream 78780 35111041 ~ 35168021 (+) True G56444
TU76155 lncRNA downstream 3667 35253318 ~ 35254002 (+) True G56479
TU76140 lncRNA downstream 26443 35276094 ~ 35279120 (+) False LOC103032256
TU76142 lncRNA downstream 26443 35276094 ~ 35284271 (+) True LOC103032256
TU76159 lncRNA downstream 35800 35285451 ~ 35286662 (+) False G56482
TU76160 lncRNA downstream 35800 35285451 ~ 35287472 (+) True G56482
XM_007229137.3 mRNA upstream 51136 35191804 ~ 35195665 (+) True LOC103034472
XM_007241248.3 mRNA upstream 157616 35083719 ~ 35089185 (+) True snap29
XM_007241246.3 mRNA upstream 163509 35039169 ~ 35083292 (+) True LOC103037259
XM_007229136.3 mRNA downstream 10269 35259920 ~ 35265350 (+) True enkd1
XM_022670547.1 mRNA downstream 16317 35265968 ~ 35274621 (+) True polb
XM_007229129.2 mRNA downstream 26428 35276079 ~ 35278890 (+) False LOC103032256
XM_007229132.3 mRNA downstream 44272 35293923 ~ 35296002 (+) True mrpl40
XM_007229134.3 mRNA downstream 50143 35299794 ~ 35308446 (+) True gle1
TU76153 other upstream 7701 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 495238 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 735159 34505455 ~ 34511642 (+) False fgf17
TU75802 other upstream 1665433 33564828 ~ 33581368 (+) False izumo1
TU76213 other downstream 171136 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 706453 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1755622 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4795002 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 5350340 40599991 ~ 40600062 (+) True trnaw-cca_40

Expression Profile