RNA id: XM_022670542.1


Basic Information

Item Value
RNA id XM_022670542.1
length 3891
RNA type mRNA
GC content 0.45
exon number 22
gene id ikbkb
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35226485 ~ 35272528 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCACTTTTCAGTATGAGGAAGTGTGTGCGCGTGAAGTTTTAATGGAAGATTCAGctttaaaaactacattttaccgctttattaaagattaaagaacaGATATAAACACTGGGTATAACAGCGCGGTAGTTACATCGTATTTAACagtgtatttaagtgtttagAAGCGGTGACTTTGATCCTGTTGTTGTGAAGGAGCGGATTCAGGTGATAAAGGACTGTGGAGAGAGCTGGACCTGAGGGGTCAGCATGAGCCGAGCTTCTCCCATGCAGCCCCAGAACTGCGGACCCTGGGAACTGAAGGAGAGACTCGGGACCGGAGGATTTGGAAATGTTACTCGGTGGCAGAACAAGgaCTCTGGGGATCAGATCGCTATAAAGCAGTGTCGTCAGGAGCTGAGCTCTAAGAATAAGGAGCGCTGGTGTTTGGAGATCCAGATAATGAAGAGGTTGAATCATGAGAACGTTGTGGCGGCGAGGGAGGTGCCGGAGGAGTTACAGAAACTGGCCACTAATGACCTGCCGCTGCTCGCCATGGAGTACTGCCAGGGAGGAGACCTGCGCAAGtaTCTGAATCTGCTGGAGAACTGCTGTGGGATGAGAGAAGGCTCTATTCTGATCCTGCTGAGAGAtatatCCTCAGCGCTCACGTACCTCCACAATAAGAGGATCATCCACAGAGACCTGAAACCAGAGAACATCGTGCTCCAGCAGGGGGAGAAACGGTTGATTCATAAGATTATAGATTTGGGTTATGCTAAGGAGCTCGATCAGAGCAGTTTGTGCACATCGTTTGTGGGGACTCTGCAATATCTGgctCCAGAGTTGTTGGAGCAGCAGAAGTACACGGTGACGGTGGATTACTGGAGTTTTGGGACGCTGGTGTTCGAGTGCATCACTGGTTTCAGGCCGTTTCTGCCCACGTGGCAGCCTGTGCCCTGGCACAATAAGCTGAAGCAGAAGCACGAGGATGATATCGTAGTTTATGAGGATTTAACTAATGAGGTGCATTTCTCCAAACACCTGCCGCAGCCCCACAACCTCAACAGgctgTTATCCGGCCGGTTGGAGCGATGGCTGCAGCTGATGCTGAGATGGTCTCCTCaggagagaggtagagacagTAAGCAGAGCTCCAGTCCGACTGAGAGCAGCGACTCGGAGGGGAAGAGCAGGAAACCGCAGGACGGAGGGAAAGATTCTCAGAGCGGATCCAGCAGCTGCTTCCAGGAGCTGGAGCGAATCCTGGAGCTGAAGCTGGTTCATGTTCTGAATATGACCTCGGCGGAGATGTGTACGTACACGGTTCAGCCCGGAGAGACCGTAGCGTCTCTACAGGAGAGAATCGCTCAGGACACACACATtccctcagccaatcaggagctgctgctggaggcTGGACTCGCCCTGGAGCCGCAGAACAACGTGATGCAGTGTGCTGTGGATTACACTTCGGTTGACGGGCGTCGGGCGGATGTTCCCCTGGTGTTTCTGTTTGATCGCTCCTGCTGTAACTACGAGCCTCAGTTCAGCCCGAGAATCCTCCCCGAAAACATCCGATACATCCAGACGGAGCCGAAGCGCATGCTGGCCTACAGTCCTCAGAGACGGACGTGTGGACAGGCCTGGCACACCATCCGAGCACTGAAGGAGGACTGGCAGAAGCTGCAGCAGGGACAGAAAGCAGCCATaatgagtctGCTGAGGCACAACGGTTCGCTCTCTAAGCAGAAGAATGAGATGGTTTCTGTTCATCAGAGACTTAAAGCTACGCTGGAGTTCTTCACCACCAGTCTGCACATCGATATGGATAAATATCAGGAGCAGAGAGCTACAGGCATCGCGTCGGAGAAGTTACTGGGAGTgtggagagagatggagcagACTGCACTGAACCGCGGTCAGACAGAAGATGTGAATAAACTGGAGGAGGAGATGATGAAGTTACAGACTGATATAGTGGATCTGCAGAGACACCCATGGAGGAGCGGTGAAGCTCTGGAGTCACTAGAGGTGAAAGCGATGGAGTTATTTCGGAAGCTCAGAGAGAAACCGCGAGatcaGAGGTGTATGGGAGATTGTCAGGAGGTGGTGAAGCTGGTGGTTCAGGCCATTCAGTTCTATGAGAAGAAACTGCGGGAGTTCTACACACACCTCagtaagaCGGTGGTGTGCAGGCAGCGGGTGATGGAGCTGTTGCCGCGGGTGGAGGGCGTGGTCAGCAGTATGGCTCAGTGTGAACAGGATCTGCTCCGCATGCAGGAGAAGAGACAGAAGGAGCTGTGGAATCTCCTCAAAGTGGCCTGtAGTAAAGTTCGCAGTCCGGTTAGTGGGAGTCCGGATGGAGGACGGACCCCACCTTCCTCCGGTCCTCCACCCCTGCAGCTCCGACCTGCTTACTCCAACAGTCTTCCTGCTCTCCACCAACCGGAGGAGTCTTTGATAGTAATTGAGGAAAGTAAGACGTTTGAGAGCCGGTTGCAGAGTCTGGTTCAGGAAACCATTAAAGAGACAGAAACCAACATGCAGTTACTGAAGGAATGGACGTGGCTGAACGGAAGTCAGGATCTGTCCTGATGTTTCTGATTCATCTTCAgtaaattttaatataaataagagAATAATGAAATAAAGGACCTGCATATCCGGGTTATCAGCAGTCCTGAACATTCAGCATCTAATAACCTGCTGAACACGAGACTGCTGAACCTCTAACGCCTCCTACTGGACAAACTGACTCACTGCCACAGACAGATCACAttttatcttttcatttttagtttttgttttattgaagaCGTGTACGACTGTAAATATTCTGCATTACTGTAATGTTGATGTTTAGATTATGTTTAATCTCTGACTGTGTTTATATGCTtgataatctgattactgctaAACATCAGAGACTGCTGGAGTTTATATTGCATTAATCAGGAAATAATcagatttatatttgtttgcatCCAGCCGATAAACCCACAGAATACCCAGCCTGCTGCAACTTGTTTAAAAGATTATTTAGATAAATTAAGCTGCATTATGAACATATGTTAGGTAGAAATTGaagatttaaagtaaattaatgctGCACAATATGGCCAAAATGTATAACTTAAAATGTAACAATAGATTATTTAATTTCAGTCCATTAGTACATTTTTAGAGCTATAAACGCTGTTTATCAGATAACTGCAGTGATACgattatgaatattcatgtaAACACAGTTACTGCTTTTAATGTCTGatcagaaaatgtgtttttaatattttttattttacaccgTTAACTTCTGTGttaaaaaggacaaaattaGACAGAAATATACAACTGAGTCATCGTTCCTCTCTTTATTGGGTTCCAGAACAGATCAGTTTATCAATTTCTTAAATCTAGTCATCATCCAGCACAACACAGAATTAAAcatgaagaaaaagagaaaaacataaaGAGGAAACGCTCCCTTTATCTCTCCAACTCCTACTGAAACACAGACGGGCCAGTGAAGAAATGATGATtaaataatgtgtgtttttttgtgtttggcaataaaaatgacaaagaatCAAAAGATTTTTACACACAGAGATATGAAGAGACGGGGTTGGACGTTTTTCAGATGAGGATTCCCTTAAACTTTGTTCTCTAAACAACAGGATACTGAAGATAGAGCTGCGCGATAAATCGCTTTAGTATCGATATCCCAATGTGCAATgttattacactttttttttactttttttgctgcTCAATACAAAGAAATATCGaccaaatataatttattttactcaaaatattgtgaCATGTAGGAACAATGCAAAATTTAAATcacagaacaacaaaatatcacaatttattgtaatttttccccaatatcgtgcagctc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K07209 IKBKB, IKKB; inhibitor of nuclear factor kappa-B kinase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650116.1 lncRNA upstream 7703 35217891 ~ 35218782 (+) True LOC111192732
TU76134 lncRNA upstream 27217 35197445 ~ 35199268 (+) True G56465
TU76122 lncRNA upstream 49506 35171898 ~ 35176979 (+) True G56459
TU76100 lncRNA upstream 58464 35111041 ~ 35168021 (+) True G56444
TU76105 lncRNA upstream 90437 35133583 ~ 35136048 (+) True G56448
TU76155 lncRNA downstream 5975 35253318 ~ 35254002 (+) True G56479
TU76140 lncRNA downstream 28751 35276094 ~ 35279120 (+) False LOC103032256
TU76142 lncRNA downstream 28751 35276094 ~ 35284271 (+) True LOC103032256
TU76159 lncRNA downstream 38108 35285451 ~ 35286662 (+) False G56482
TU76160 lncRNA downstream 38108 35285451 ~ 35287472 (+) True G56482
XM_007229137.3 mRNA upstream 30820 35191804 ~ 35195665 (+) True LOC103034472
XM_007241248.3 mRNA upstream 137300 35083719 ~ 35089185 (+) True snap29
XM_007241246.3 mRNA upstream 143193 35039169 ~ 35083292 (+) True LOC103037259
XM_022670533.1 mRNA upstream 143193 35039169 ~ 35083292 (+) False LOC103037259
XM_007241247.3 mRNA upstream 143193 35039170 ~ 35083292 (+) False LOC103037259
XM_007229136.3 mRNA downstream 12577 35259920 ~ 35265350 (+) True enkd1
XM_022670547.1 mRNA downstream 18625 35265968 ~ 35274621 (+) True polb
XM_007229129.2 mRNA downstream 28736 35276079 ~ 35278890 (+) False LOC103032256
XM_007229132.3 mRNA downstream 46580 35293923 ~ 35296002 (+) True mrpl40
XM_007229134.3 mRNA downstream 52451 35299794 ~ 35308446 (+) True gle1
TU76054 other upstream 474922 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 714843 34505455 ~ 34511642 (+) False fgf17
TU75802 other upstream 1645117 33564828 ~ 33581368 (+) False izumo1
TU76213 other downstream 173444 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 708761 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1757930 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4797310 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 5352648 40599991 ~ 40600062 (+) True trnaw-cca_40

Expression Profile