RNA id: TU76416


Basic Information

Item Value
RNA id TU76416
length 331
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G56649
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35529904 ~ 35530234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaattaaaaactgtgattaaaaaccaaccagggttattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagtcatttctcattttctgtaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76205 lncRNA upstream 61868 35392302 ~ 35468036 (+) True G56499
TU76216 lncRNA upstream 71027 35420718 ~ 35458877 (+) False G56504
TU76212 lncRNA upstream 108286 35420787 ~ 35421618 (+) False G56504
TU76214 lncRNA upstream 108739 35420787 ~ 35421165 (+) False G56504
TU76181 lncRNA upstream 209131 35319879 ~ 35320773 (+) True G56492
TU76422 lncRNA downstream 13463 35543697 ~ 35543990 (+) True G56655
TU76425 lncRNA downstream 23147 35553381 ~ 35553752 (+) True G56658
TU76439 lncRNA downstream 47288 35577522 ~ 35577822 (+) True G56669
TU76442 lncRNA downstream 53652 35583886 ~ 35584101 (+) True G56672
TU76443 lncRNA downstream 77589 35607823 ~ 35608182 (+) True G56673
XM_015603846.2 mRNA upstream 92477 35405454 ~ 35437427 (+) True LOC103030350
XM_022670555.1 mRNA upstream 139732 35371912 ~ 35390172 (+) True LOC103030661
XM_007229122.3 mRNA downstream 64749 35594983 ~ 35605830 (+) True lhx2
XM_007229121.3 mRNA downstream 188715 35718949 ~ 35724427 (+) True LOC103029489
XM_007229120.3 mRNA downstream 188719 35718953 ~ 35724427 (+) False LOC103029489
XM_007229119.3 mRNA downstream 197113 35727347 ~ 35734257 (+) True ctu1
XM_022670563.1 mRNA downstream 206353 35736587 ~ 35765222 (+) True pxn
TU76213 other upstream 105431 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 290804 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 778341 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 1018262 34505455 ~ 34511642 (+) False fgf17
TU75801 other upstream 1948536 33577711 ~ 33581368 (+) False izumo1
TU76490 other downstream 425870 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1475039 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4514419 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 5069757 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 5144806 40675040 ~ 40680555 (+) True G57856

Expression Profile