RNA id: TU76741


Basic Information

Item Value
RNA id TU76741
length 2839
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G56883
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35769023 ~ 35772140 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatatatttatataatggtATGAACTCAGTCAGTTACCACAACTCACAGAAcgacaaaaaaaagtgtgacagTGTTATGGAAAACAAACGAACGGAAAATTTAACATAGCAAATGTTCACATTgggtaaataaaaacagattattaTATGAAGGCCCACTAAAATAGACTGGAACAgtataaattaaacaaacagagaggagagaaataCTGAAGCCCTCATCacgaaagaaaaaacaaaaaggggagataaaaataaaaaccagtGTTAAAAACCATAAATGGGTTCTGAGGCAGATGTGAAGTCGTTTAGCCAGCAAATCCACCCCATCAGGACCATCGAGTGAGTCCTCCTTTTGGCATGAAGAGGTCTGAGCGAGAAGAACAGCGAGAAAGAGGACAGATCTCTGAATTATCACAGCATCTCTATTAAAAGTGGcatcattatatattttattaattagagaaaacagaaattaGGCTGAAAATCAGAGTAGAGTCCTCATATCAGTCATGAAGAgatcttttttattatcaaaCATCATTgagaatcaacaacaataatCTCAATGGttatgagaagaaaaaaataaaataaaataaaagataaagagCTGTCGGTAACGTCTCACATGCGATCTTTCATCTGatgcaatatataataataataataataataataataataataataatactccatACAGGGTCACTGAAATTCTGGACAAGCAACCAGCTCTTACACACcagcattatttattataaggaGGGACTTTAGAGTGGGGCTACGTTTCAAAAACCATTGGCACCATTATAACCCTCACTCTTTATGACTAGTTATCTAAAATACTGGAGTGACATTTAAGACTttcatgcaaaaaaagaaaaacaaaaaaaaggtaggaaaatacattagaataaatcataaaacaacaatacagCAGTTATCAATATTGCCAAAACTTGAGAGAAATCCTCTCAGATTCGTATCTGAAATCATACGCTGTGTCGAAGGGCTAAAAACTGCACATTGTCACAGCTGCTTTAGGACACTGAATGCGTTTACATTAACTTTATAATAATCTGATTACTACAGAATATCAGAGATTGTCGCTAATCTGatcaaattaaagtattttatattgaaCCTGGGTAATAATATGATAATGTACATCAATTAAAAgattaatattactgttttttttttcctcgcaCTATAAGTTGCATTATGTGAcagtagtaaggaacaggggtgtcaccatgttttccttctaattcagcagatctcgccgctgggtggtgaaACCTGTAAaggtaagctaagctaacaaaactgtaattcttaaaacaaaaaaatatttatttaaagtcaaacaagcgctggatgttaatctacacagatttctctcctgaaaactgtttatttgtgtgagtaaagcacttctgtttatttacagtaagcttagatttccagatttataCTAAGGTTAGctgcggttagctgctaatgctgtcgacagcactacactgaggaaccctgagtgttctggtaagctaTGGCAATATTAGCAAGCGGTTTGTCtaatgtagcttattttaacatggtaaacacgcagactacagtctgatatactcacctctgaacggtgaaagtggctaattagtggctaatgctaatgctgctccagcagtgctggagaaacttcaggCCACAGGCTGATATgcttacctctgaacagggaaatagtggttaaaggctaatgctaatgctgctccagtcttggtgctggagaaacttcactgtaactcctgtataactctgtacttcagtggagtgtctttactgctccttaatacctgactggtagaattcatacataaggagcaccggattataaaatgcactgacaattttggggaaaattaaaggatttaatagtgcaaaaaatgcagtgtttaatTTAGGTCCCCAAGTTTTTCACTAATTTGTGTATACTGAGAATACTTTGGTTACAAGTTTTTCCAGAGTTTTCTTAGAAACCCAGGTCTCTTTACTTAAGATTGGGGAAAGATTTGACAAAATATAAGTAAGAGTAATCAGAGTAAGCTCTGTACATGTCTGCTGTAATAATCAGATATAAACTGAAGATATCAGATTATAAATaagcatgtaaacacactcagtgTCTCATCTACAGTTCACTCGAGgaggacttaaaaaaaaagaaaagaaagaaaagaaaaatacgTTAGGGTGGACGTAAGGCTTATTACCACACTTCCTGTCTCTCCTGTCCACCTCATGTAGGCcaacatgatttatttttatttttattttaaaacaggcTGGTATTTGTTGGCAAACATACACAAAGATATCATTCTCCATAGAAATGTACATAATCTGTTACTAAAGAATAATTTTTTGGTATATTTCTCATATTTCCATTAATTTCTGATAGAAAACAAGGCACTGAGCACTGTAATATAAACTGATTAGATTTCTCGTCGCAACGAATCGACTCGCCGCCCAACCGTTGCAAACAGTGATCACATTTTGCCACCGTGGCACGATCCTCactacatcatcatcatcatcatcatcgtctcACCCGCTCCACAGAGCAGTGTTTCATAGTTAAAAGACTTTCTCAGATCAGCTGATCCAAAATTAACCGAGCTGATCCAAACAGAACTGATCTGAAGCCACATTCTTAAAACGGTTTCTTTCAGACTCAACCAGTGAGCAGAACATCTATCCTAACAGCTTCtaacctctttctttcttcctcctcaCCTTTCTTCCTCCTACACAAGCTTtcaccacactctcacacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76730 lncRNA downstream 34779 35728692 ~ 35734244 (-) True G56878
TU76721 lncRNA downstream 100680 35658428 ~ 35668343 (-) True G56872
TU76720 lncRNA downstream 103780 35657193 ~ 35665243 (-) True G56871
TU76463 lncRNA downstream 125959 35642805 ~ 35643064 (-) True G56693
TU76451 lncRNA downstream 188788 35579981 ~ 35580235 (-) True G56681
TU76754 lncRNA upstream 12640 35784780 ~ 35852433 (-) True G56891
TU76738 lncRNA upstream 37454 35809594 ~ 35810342 (-) True G56882
TU76734 lncRNA upstream 39391 35811531 ~ 35822638 (-) True G56881
TU76781 lncRNA upstream 55132 35827272 ~ 35829872 (-) False G56911
TU76782 lncRNA upstream 55132 35827272 ~ 35829872 (-) True G56911
XM_022670561.1 mRNA downstream 373779 35390808 ~ 35395244 (-) True LOC111192675
XM_022670957.1 mRNA downstream 398063 35367649 ~ 35370960 (-) True LOC111192733
XM_022670551.1 mRNA downstream 436589 35321985 ~ 35332434 (-) True LOC103038782
XM_007229126.3 mRNA downstream 448235 35316282 ~ 35320788 (-) True LOC103031304
XM_007229128.3 mRNA downstream 453450 35310689 ~ 35315573 (-) True LOC103031932
XM_022670574.1 mRNA upstream 60546 35832686 ~ 35867084 (-) True bicdl1
XM_007229104.3 mRNA upstream 170547 35942687 ~ 35947822 (-) False mrps36
XM_022670569.1 mRNA upstream 183963 35956103 ~ 35964161 (-) True pola2
XM_022670567.1 mRNA upstream 199837 35971977 ~ 35992502 (-) True LOC103036583
XM_022670568.1 mRNA upstream 199837 35971977 ~ 35992500 (-) False LOC103036583
TU76749 other downstream 1346 35766770 ~ 35767677 (-) True G56887
TU76403 other downstream 346874 35420830 ~ 35422149 (-) False G56638
TU76360 other downstream 469434 35296346 ~ 35299589 (-) False c6h22orf39
XR_002650079.1 other downstream 475602 35285422 ~ 35293421 (-) False acaa2
TU76301 other downstream 660630 35093551 ~ 35108393 (-) True LOC103038119
TU76790 other upstream 67307 35839447 ~ 35844514 (-) False bicdl1
TU76808 other upstream 156340 35928480 ~ 35947810 (-) False mrps36
TU76807 other upstream 170502 35942642 ~ 35947810 (-) True mrps36
XR_002650081.1 other upstream 199590 35971730 ~ 35992502 (-) False LOC103036583
TU76819 other upstream 226280 35998420 ~ 36001169 (-) False unc45b

Expression Profile