RNA id: TU76807



Basic Information


Item Value
RNA id TU76807
length 1066
RNA type TUCP
GC content 0.47
exon number 5
gene id mrps36
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35928480 ~ 35947822 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGCGACAGTATTAAAGGACAGTGCTGCTACTTCTAGGCCACCTAACAGTATTTTTGTGTTTCCAGCGGAATAACAAAATTAACGACATGTTCCACAGCTATATAGCGATATTTTGGTAATTGTGGGGATGGAAACAGCGCCCCCTGCAGGCCGGCGGTGAATCAGCAGCTCGTTAACCCGGACGCTGTAGCTGGAGGTCAGTATGGGAGGCAGAGTCAGCAGGGGGAACATGGCCGCTGCCAGTCGGGTCGTGCAGGCGGTGCGACCGCATCTACCATCAATCAAGTTTCCAAATCGTCAGGGATTACCCAGGCCCAACGtccaaGAAGCACTAAAATTGCTTGCAGTGAACCTCCCTCAGTCCTCTCCACCTGCAtccgcagcagcagcacagacaGCTACTCCTGCCCCTAGACCTGCAGCGGCGCTCAGCCGCCTGCCGGGAACACCAGACAGCATCGCTGCTGTTAAAGAGCTTCCACAGAGATACCGCCGACGACCACTCGCACTAGAGGAAATGGACTATATTCAGCGTGGCGGCCCGGAGTGACGGTGTTTCAGCACATCTTCTTAAAGCCATTATCTGTGGAAATGGTTTATGTTGCCTAATACTTTTCCTCAGCAAGAGGACTCGCCAGATTTCACCTTACAggaattaaatacattattgtTAAAATGTACATAGAGATTATTTTGGAGCATCACTGTAACGCCGTGTGCTGGGTCTGTCTGCTCGTTAGTTCAGCTGCTCTCCGGTTTGAGTTCGGTGTGTTGTTCTTCAGTGAGCGTCTGCAGAAATTAACTTCTGGATTAAATCAGTATTTAAGCTTATTTATTCCATCACGAGCTGAGCTGCTGAGTCTAAACTGCACTACACTGATGGAACGGGACCCTTCTGTTTCTTTGCTTGTGACCCAAAAAAGAGAATTATTCAGTTTTCTGTCACTACATTCATCCTGTGCTGTTCAGAGGTGGATTCTGCAGGATGCTGTTCATCTGAATTAAACAGTAGTAATTTTGATTTCTCTGTGTGATCATTTATAGATATTAAATAAGAATTTAATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76793 lncRNA downstream 50586 35870251 ~ 35892056 (-) True G56914
TU76795 lncRNA downstream 68614 35871836 ~ 35874028 (-) True G56916
TU76780 lncRNA downstream 105434 35831212 ~ 35837208 (-) False bicdl1
TU76781 lncRNA downstream 112770 35827272 ~ 35829872 (-) False G56911
TU76782 lncRNA downstream 112770 35827272 ~ 35829872 (-) True G56911
TU76825 lncRNA upstream 65597 36013407 ~ 36014123 (-) True G56939
TU76826 lncRNA upstream 102568 36050378 ~ 36068161 (-) True G56940
TU76832 lncRNA upstream 131977 36079787 ~ 36097997 (-) True G56946
TU76859 lncRNA upstream 272071 36219881 ~ 36220672 (-) False G56967
TU76860 lncRNA upstream 272071 36219881 ~ 36221207 (-) True G56967
XM_022670574.1 mRNA downstream 75558 35832686 ~ 35867084 (-) True bicdl1
XM_022670561.1 mRNA downstream 547398 35390808 ~ 35395244 (-) True LOC111192675
XM_022670957.1 mRNA downstream 571682 35367649 ~ 35370960 (-) True LOC111192733
XM_022670551.1 mRNA downstream 610208 35321985 ~ 35332434 (-) True LOC103038782
XM_007229126.3 mRNA downstream 621854 35316282 ~ 35320788 (-) True LOC103031304
XM_022670569.1 mRNA upstream 8293 35956103 ~ 35964161 (-) True pola2
XM_022670567.1 mRNA upstream 24167 35971977 ~ 35992502 (-) True LOC103036583
XM_022670568.1 mRNA upstream 24167 35971977 ~ 35992500 (-) False LOC103036583
XM_022670924.1 mRNA upstream 45715 35993525 ~ 36007987 (-) True unc45b
XM_022670576.1 mRNA upstream 69083 36016893 ~ 36070995 (-) False LOC103036273
TU76790 other downstream 98128 35839447 ~ 35844514 (-) False bicdl1
TU76749 other downstream 174965 35766770 ~ 35767677 (-) True G56887
TU76403 other downstream 520493 35420830 ~ 35422149 (-) False G56638
TU76360 other downstream 643053 35296346 ~ 35299589 (-) False c6h22orf39
XR_002650079.1 other downstream 649221 35285422 ~ 35293421 (-) False acaa2
XR_002650081.1 other upstream 23920 35971730 ~ 35992502 (-) False LOC103036583
TU76819 other upstream 50610 35998420 ~ 36001169 (-) False unc45b
TU76883 other upstream 305557 36253367 ~ 36261542 (-) False LOC103023491
TU76887 other upstream 371246 36319056 ~ 36320695 (-) True G56987
TU76929 other upstream 455040 36402850 ~ 36403298 (-) True G57014

Expression Profile