RNA id: XM_022670925.1


Basic Information

Item Value
RNA id XM_022670925.1
length 2372
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC103023491
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36226129 ~ 36261545 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAACGAGAGCGCGCGCGCTGGgggtgaagagagagaggggcattATCTCCTCTTCTCACGCCCGTATCCGTGCGTTTTCAGCGGGCATTATGCGGAGGTGAAGACGGTCGCGGTGCTCCGCCGCTCGAGGTTTCGCATCCTTGCGGATTCTGAACCGAGCAgcgctttattttttattattttatttttatacattttttatttttatacggAGCTCCTCCGCGGAGCAGCGGCCGCGTGCACTCATGCATTCGAACAGAGGTTTAGCGCGGAGGAACTGCCTCGAGAATATGAACTGCAGCTGGGGCACGGAGCTGTGGGATCAGTTTGATAACTTGGAGAAGTACACGCAGTGGGGCATCGAGTTTGTGGAGCGCTACACCAAGTTTGTAAAGGAGAGATCTGAAATCGAGCTCAGCTATGCCAAACAAATAAGAAATCTGTCGAAGAAATACCAGCCCAAGAAGAACTCcagagaagaggaggagtaCAAGCATTTTCACGACGGCCGCAGAGCTCAGCAGCATATCGAGAACTCCTGGAAGCAGCTGGAGTCGAGTAAACGCAGGTTCGAGCGAGACTGCAAGGAGGCGGACCGCGCCCAGCATTACTTTGACAAGATGGACGCCGATATAAACGTGACCAAGGCAGACGTGGAGAAGgcgaAGCAGCAGGCTCAGATGAGGCATCAGATAGCTGATGACAGTAAGAACGAGTATCTCTCCTACCTGCAGAAGTTTAATAAAGACCAGCATGAGCATTACTACACCCTCATCCCGCACATCTTTCAGAGGATCCAGGAGATGGAGGAAAGGCGGATTGAGAGGATAGGGGAGAGTATGAGGTGCTATTCAGAGGTGGAGCGTAAAGTTCTGCCCATCGTCAGCAAGTGTCTGGATGGAATGACCAAGGCGGCGGAGTCTATCGAGCCCAAAATGGACACCAAGCAGGTGGTGGAGACATTTAAGTCTGGTTTTGAGCCCCCGGGGGACGTGGACTTTGAGGACTACAGCGTGTCGATGAAGAGAGCCGTGTCGGAGTCCAGCTTTCTGAATGCCCGTGGGGAGAGCCGGCGCAGGAGCCGGAGCAAACTGTGGCCTTTAATTAAGAGGAATAAGCTTATGTCTTTGTTAGCGTCCCCTCGACagccccctccccctccccccacgTCCCCGTCCCCGGAGGGCCTGGCTAACGGACCCCAGTCGCCCCAGCAGCCCAAGGAGCCCCTGAGTCAGCGGCTCAACGACTTCATGAGCTCCAAACACAAGATGCAGTGCCTGCGGAGCCTCAAACGCGGGCTTATGTCTTTGTTAGCGTCCCCTCGACagccccctccccctccccccacgTCCCCGTCCCCGGAGGGCCTGGCTAACGGACCCCAGTCGCCCCAGCAGCCCAAGGAGCCCCTGAGTCAGCGGCTCAACGACTTCATGAGCTCCAAACACAAGATGCAGTGCCTGCGGAGCCTCAAACGCGGGCTCTCCCTGAAGCTGggAACAGGTCAGGAAGACTACAGTCATTTACCACCCGAGCAGCGGAGAAAAAAACTGCAGGCCAAACTTAATGACGTCAGCAAGGACATCCAGAAAGAGATGGATCAGAGGGACGCCCTGACTAAGATGAAGGAGGTGTACATTAAGAACCCTCACATGGGCGACCCCAACAGCGTGGACCCCCGCTTAGAGGAGGTGCAGCAAAGCATAGAGAAGCTGCAGCTCGACGCACATAAATATGAAGGCTGGCTAACAGATGTGGAGAGAAAGCTGCTAGAAAAAGGCAGCACTCAGCGGAGACAGAGCGCCCACTTCGACTCGCAGGGGAACACGCCCAACAGCTGCGCCCAGAACAGAGAGAGTCCGGATGGCAGCTACACGGAGGACCCCAGCACGGAGACGGTGCAGTTCAAGTCCCGCAGCACCGAGTTCGATGATGAGTTCGATGATGAAGATCCTTTACCCACCATAGGAACATGCAAAGCGCTCTACCCGTTTGAAGGTCAGAACGAGGGCACCATCCCGTTGGCGGAAGGAGAGATGCTGTACGTGATCGAGGAGGACAAGGGGGACGGATGGACGCGTGTGCGCAGGAACGAGGACGAGGAGGGATACGTCCCCACGTCCTACATCAAGCTGTGCTTCGACGCAAACTCCAAAGGTGCCATGACATACATCTAAAACCCCACAGAGCTAAAACAGCAGCCTGCTTAGAGTCAGCAGCTTCCTCTAGTCGTCCTCATCCTCGGGCCGTCTCCTGATTGGTCGGTAGGGCGGGACAGGAATGGAAAAGGCAGGAATTGTTCACTCTGGGCTGTTTAATGATGATTTAcctctgctttaaaaaaaaataaagagagagaggctgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76856 lncRNA downstream 1119 36221459 ~ 36225010 (-) True G56966
TU76860 lncRNA downstream 4922 36219881 ~ 36221207 (-) True G56967
TU76859 lncRNA downstream 5457 36219881 ~ 36220672 (-) False G56967
TU76861 lncRNA downstream 5457 36219881 ~ 36220672 (-) False G56967
TU76832 lncRNA downstream 128132 36079787 ~ 36097997 (-) True G56946
TU76904 lncRNA upstream 36514 36298059 ~ 36341036 (-) True G57001
TU76902 lncRNA upstream 52480 36314025 ~ 36331568 (-) True G57000
TU76928 lncRNA upstream 146630 36408175 ~ 36408452 (-) True G57013
TU76924 lncRNA upstream 149690 36411235 ~ 36412749 (-) True G57010
TU76925 lncRNA upstream 150640 36412185 ~ 36412749 (-) False G57010
XM_007229097.3 mRNA downstream 16470 36208216 ~ 36209659 (-) True c6h9orf116
XM_022670576.1 mRNA downstream 155134 36016893 ~ 36070995 (-) False LOC103036273
XM_022670577.1 mRNA downstream 155134 36016893 ~ 36070995 (-) True LOC103036273
XM_022670924.1 mRNA downstream 218142 35993525 ~ 36007987 (-) True unc45b
XM_022670567.1 mRNA downstream 233627 35971977 ~ 35992502 (-) True LOC103036583
XM_007229100.3 mRNA upstream 70923 36332468 ~ 36340503 (-) True anapc7
XM_022670583.1 mRNA upstream 70923 36332468 ~ 36339921 (-) False anapc7
XM_022670585.1 mRNA upstream 83057 36344602 ~ 36385497 (-) False LOC103035014
XM_022670584.1 mRNA upstream 83057 36344602 ~ 36385497 (-) True LOC103035014
XM_022670586.1 mRNA upstream 83057 36344602 ~ 36385495 (-) False LOC103035014
TU76819 other downstream 224960 35998420 ~ 36001169 (-) False unc45b
XR_002650081.1 other downstream 233627 35971730 ~ 35992502 (-) False LOC103036583
TU76808 other downstream 278319 35928480 ~ 35947810 (-) False mrps36
TU76807 other downstream 278319 35942642 ~ 35947810 (-) True mrps36
TU76790 other downstream 381615 35839447 ~ 35844514 (-) False bicdl1
TU76887 other upstream 57511 36319056 ~ 36320695 (-) True G56987
TU76929 other upstream 141305 36402850 ~ 36403298 (-) True G57014
TU76959 other upstream 428800 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other upstream 428800 36690345 ~ 36723365 (-) False LOC107196826
TU76973 other upstream 523917 36785462 ~ 36792438 (-) False LOC111192678

Expression Profile