RNA id: TU76902


Basic Information

Item Value
RNA id TU76902
length 2154
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G57000
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36314025 ~ 36331568 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTTATTGTCCCTTTATTGACCGTAAGTCATTGTGATAATTACAATACTCAACACTGATTGAACAGTGTCTCGCCATCGCTCATCACTGAAACTCCTCTCAGCTGAAACTCTGATCTGCTCTAAAACTGGACGCACATCTTCCCACTGTGCCGAGAGATAACGCTCAGAATCGGctgattaaaaaagagaaatacattatttattggTTTCCGAGGGAAATTCTAGTATTATATCTCTAAAAACGTCTTCTgacaaaaaatagacaaaaaaaaaaatggtgccTGGTAAACACTAATGCCATCTGCCATCTGTTTTTTCTTATACATCTTTATCTCTATATATAAAatctctattatatatatatctatatataaattaaGTGTTGCTGTGCTATACAAAAAAGCTTATAATCTTCCCAGAACAAAATGTCTGAGTATCTTAAGGGGCATGCACCATGAAGAGCTCCTCATTTCCCTTCAGATTTTAACTTAATTCTATTAATCAATTAAAGTctcttttaaaaacttaaaaaacgaACAGTCTTTACCACTCACTCCAAATTAACaaacctgtttttttccagTACCTTTTCTAAGCTAATTATTTATACAcctgtacttttattttgatttttatttgatttttctcTGTAGCACAGTTCATGGCATGCAGGTCTTGGATGATGTGGTACTGCTCAAATCACACTTTCTATAATCTATTAAAACCTTTTACAGCTTCCGCAAAGAGTTTCCGAGAGCCAGGCTCAAATCGCCCgagctgaggagagagagaaaagaaagagagaaagaaagaacaataaaaagtaATGAGTGGAAgaaacaatcaatcaaacaaacaaaaaacaaaggcaatgtaaattaaatcttatatCCTAAATCAATAATGTTTCAAAGCTGattcaaaaaatgtatatccccctatcactagtgatgcttcaagaccaggagggttaagaagaccagcacatgcctcctccgatacatgtgaagtcagactccgcctctttttgaacctttttaataagtagcatcacagcgtgctaatgctcagaggaaagcacagtgactctgttctgatacagcagctcacagacgcagccttgtgctgatccacatcaccctataaggagtgatgaggggaaggagagagagtgccatctactgtactgtacacacccagagagagagcaaggacattTATTGTGCTCTATCAGGGCTctagtagctgatggcaagctgcatgaccgggattcgaaccagcgatctccagctagatcatagtggcagagctttagactgctggagcACTCAATGTCTTTATATTAATGGACCATAATATCAAAACACACTAAATGACCAGGTTTACATCACTATAACTTCaattacacacaaaatattCAACAATCCATCAATCAGTGAGTGAGTTCTTCTGTACAGTAGTATTTATTAAGGAGGTGATGAAGTTACAGtcgtgtttttttgtgttatcatcatcattaatattattaatattattattttaagcccAGTTTTGAGTGAAGCATGCTCACCACAATCACCTGAAATCAGACATTCCTAATCAAGTGCAgctcagattaaaaaaatagggAGGATCTGTTTCCAGCATGTGCTATATACACAGGCCTGCAACCAGCGGGGCCTTCTAATGGCACAAACTCCATTTCTAAAATTCAATTCTCACCTTTAAAACTCCATTAAAACTGAATACCGGATTTtctcgcactataaggcgccgCTAAAATTCTTTAAATCTCCCAAAAATTGttagtgcgctttataatatgaattctctgctgaagtacagcgttatacaggaacATAGTGTCagagaagtttctccagcactaaggctggagcagtattagcattagccgctaaccacaccaagcactagctctttcaccatttagaggtgagtatattgtaGACCGTAGTCtccatgtttactgtgttaagaCAAGCTACGTAAGACGAACTTCTAGCTGATACAGTGGGCCTGGCTTACCGACACACTTagggttagctgctaatgctaatgctgctgctgcacctagccttagtggaaatctggaaatttggaaatctaagcttactgtaaataaatggaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76879 lncRNA downstream 80679 36231079 ~ 36233346 (-) True G56982
TU76856 lncRNA downstream 89015 36221459 ~ 36225010 (-) True G56966
TU76860 lncRNA downstream 92818 36219881 ~ 36221207 (-) True G56967
TU76859 lncRNA downstream 93353 36219881 ~ 36220672 (-) False G56967
TU76928 lncRNA upstream 76607 36408175 ~ 36408452 (-) True G57013
TU76924 lncRNA upstream 79667 36411235 ~ 36412749 (-) True G57010
TU76925 lncRNA upstream 80617 36412185 ~ 36412749 (-) False G57010
TU76927 lncRNA upstream 268470 36600038 ~ 36603428 (-) True G57012
TU76964 lncRNA upstream 494199 36825767 ~ 36833067 (-) False G57043
XM_022670925.1 mRNA downstream 52480 36226129 ~ 36261545 (-) True LOC103023491
XM_007229097.3 mRNA downstream 104366 36208216 ~ 36209659 (-) True c6h9orf116
XM_022670576.1 mRNA downstream 243030 36016893 ~ 36070995 (-) False LOC103036273
XM_022670577.1 mRNA downstream 243030 36016893 ~ 36070995 (-) True LOC103036273
XM_022670924.1 mRNA downstream 306038 35993525 ~ 36007987 (-) True unc45b
XM_007229100.3 mRNA upstream 900 36332468 ~ 36340503 (-) True anapc7
XM_022670583.1 mRNA upstream 900 36332468 ~ 36339921 (-) False anapc7
XM_022670585.1 mRNA upstream 13034 36344602 ~ 36385497 (-) False LOC103035014
XM_022670584.1 mRNA upstream 13034 36344602 ~ 36385497 (-) True LOC103035014
XM_022670586.1 mRNA upstream 13034 36344602 ~ 36385495 (-) False LOC103035014
TU76883 other downstream 52483 36253367 ~ 36261542 (-) False LOC103023491
TU76819 other downstream 312856 35998420 ~ 36001169 (-) False unc45b
XR_002650081.1 other downstream 321523 35971730 ~ 35992502 (-) False LOC103036583
TU76808 other downstream 366215 35928480 ~ 35947810 (-) False mrps36
TU76929 other upstream 71282 36402850 ~ 36403298 (-) True G57014
TU76959 other upstream 358777 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other upstream 358777 36690345 ~ 36723365 (-) False LOC107196826
TU76973 other upstream 453894 36785462 ~ 36792438 (-) False LOC111192678
TU77626 other upstream 3189976 39521544 ~ 39562891 (-) True LOC103030299

Expression Profile