RNA id: TU76925


Basic Information

Item Value
RNA id TU76925
length 565
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G57010
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36411235 ~ 36412749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagtgtgccaagtcctgctggagaatgaaatccacatctccataaaagtggtgtctctactcttcctccagactcaaTTATTGTTCAATTATTCTATagtcttttattttacaaatgaaaaattgtaattgtaaaatttgctgatgatcagtgatggtttggagagtcatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatatcttacagcttccctctgctgatctGAAcctttatagagatgcagatttcattttccagcaggatttggcacactgcccacactgccaaaagtaccaattggtcttatttaaattctaattttctgagacactgatttttgggttttcattgtctgtgagcttcataatcatcaacaataaaatcaataaacaagtaaaatagatcacactgtgtttaatacatctatataatatatgagttttacttttttttgccgATACCATTAGAAAATGTATCACGATTCAattaaatatcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76928 lncRNA downstream 3733 36408175 ~ 36408452 (-) True G57013
TU76904 lncRNA downstream 71149 36298059 ~ 36341036 (-) True G57001
TU76902 lncRNA downstream 80617 36314025 ~ 36331568 (-) True G57000
TU76879 lncRNA downstream 178839 36231079 ~ 36233346 (-) True G56982
TU76856 lncRNA downstream 187175 36221459 ~ 36225010 (-) True G56966
TU76927 lncRNA upstream 187289 36600038 ~ 36603428 (-) True G57012
TU76964 lncRNA upstream 413018 36825767 ~ 36833067 (-) False G57043
TU76963 lncRNA upstream 414645 36827394 ~ 36833067 (-) True G57043
TU76965 lncRNA upstream 414645 36827394 ~ 36839252 (-) False G57043
TU77051 lncRNA upstream 630578 37043327 ~ 37058088 (-) True G57107
XM_022670585.1 mRNA downstream 26688 36344602 ~ 36385497 (-) False LOC103035014
XM_022670584.1 mRNA downstream 26688 36344602 ~ 36385497 (-) True LOC103035014
XM_022670586.1 mRNA downstream 26690 36344602 ~ 36385495 (-) False LOC103035014
XM_007229100.3 mRNA downstream 71682 36332468 ~ 36340503 (-) True anapc7
XM_022670583.1 mRNA downstream 72264 36332468 ~ 36339921 (-) False anapc7
XM_022670587.1 mRNA upstream 123 36412872 ~ 36492714 (-) True med27
XM_022670590.1 mRNA upstream 192658 36605407 ~ 36641563 (-) True LOC103045855
XM_022670592.1 mRNA upstream 192658 36605407 ~ 36641557 (-) False LOC103045855
XM_022670926.1 mRNA upstream 267417 36680166 ~ 36746634 (-) True LOC107196826
XM_022670594.1 mRNA upstream 342417 36755166 ~ 36778310 (-) False LOC103045561
TU76929 other downstream 8887 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 91490 36319056 ~ 36320695 (-) True G56987
TU76883 other downstream 150643 36253367 ~ 36261542 (-) False LOC103023491
TU76819 other downstream 411016 35998420 ~ 36001169 (-) False unc45b
XR_002650081.1 other downstream 419683 35971730 ~ 35992502 (-) False LOC103036583
TU76959 other upstream 277596 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other upstream 277596 36690345 ~ 36723365 (-) False LOC107196826
TU76973 other upstream 372713 36785462 ~ 36792438 (-) False LOC111192678
TU77626 other upstream 3108795 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 3108795 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile