RNA id: TU76927


Basic Information

Item Value
RNA id TU76927
length 3343
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G57012
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36600038 ~ 36603428 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttaccatatatatatatggactcataattaaaaaaaaggcaatCCTCACGCGCACAGACGTATTAATAAACCTACACACAGAGCACACGTCACGCGTGAGCGTCAGGGGGCTgaaggtacaggtacaggttgcattcttcacttttatttttaatttttcctccACTAGAACCTGTTCTCAGGGCAGCTGCAGCAAAACACTATATAGCGGCATGCTCCGCCCACATGTGCGCACATCAGAACAAGCGTTGTGACTTTGGACAAGCTTTTAATCATGAACTATATTAGTGCACAACCTACAGACCTactaacatttctcccaaattccaaattaaaaatatcatcatttagagcaATTACTTGCAGGAAATTCAAGATGTAGAGCTTTTGGGcctcaaataaggcaaagaaaacaggttttaaaagttcagaaataatcaatatttggtggaataatcctggtttttaatcacagtttttaattcatgcatcttggcatcatgttctcctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattataCCTGAGGgggcgctgcagaggtggaaattaacacaataaaagcattttgaaggttagaaaatgtttttaaaaaagcagagAATTTAAGACCGGTTTGTTTCATCACCTCAAAAggacacatttcagctattgataagaaaatatataagattGAGGTTTTAGTGGTTCTTTAAGTCATCCCCTTAATCTATGTTATACAGATAAAAAGCATAGCTGCATAGCTCCTTTCATATAAGAAGAATACCTTgaattaattagtgtaattcgtcctctgcattgttttaaaatggtttatcattcatttgatacattttcttatGTTTTTGAGCAAGGCTTGTCCAACCCAACAACCTTATTTAGTTTCTAACAGagtataaaagtacattttaattgtGGGCGGAGCATGAGAATAACTTTTAGCTGCACAGGTCCGTCAGTCCTGCTGAGGAACGCTCCAGTAATACTTAGAGagcattaataaatataatataataaataataaacatgatCTCCTGTAGTGTGGGTGTTTTGAGCTGAAGTGAACTAAAGTGAAGGTTTACAGACTGACCGTTCAGTTACGccgtttttaacttttaacattcAACTGTGGGGCGGAAAAAATGATTGTGAGGGGGGGaaataagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggttagGCTGAATTCTTCTCTGTGTCTCAGTTCTTTGgatttgttagaatttgtttttgttgtttttgttcccagtttgtaattgtaattttaatttatgtttttaaattatgtccagatgttttatttattccggtgtgtgtttggtgcCCCTCCCCTGAGCGCGAGAGTGTGGCGCGAGAGCGGCTGGTTGAGTTGTGAAAGCTGGGTGATAAAGAAGTGCAGGATGAGGAGGATTCTCAGTATTGCAGAACTCAAAACTGGTGGGACTGATTTTCTGATCAAAGTGGTCTTAATGTGCTCCTTCTTTCATTaacctcctcctcttctttttcctcctcctgctctttctcttccatctgctctttctccatctccacctactcttcctcctcctcatctttctcctcttcttcctcctcctcctctttctcttcctcctcctcttcttcctcctcctcttcttcctcctccttttcttcctcctcctcttcgttTTCGtcctcctctccttcttcctcctcctcttttactctccctcctcctccttttcttcCTCCTGCTCATCCTCTTTCTCTTGTCCCCCTCCTCCACTTCCTTCTTtacctcctcttcttcctcctcatctttgtcctcttcttcttcctcctcctcctctttctcctcttcctcctccttttactctccctcctcctcttcctctttctcttgtCCCCCTCCTCCACTTCATTCTTtacctcctcttcttcctcctcctcttcctcctcatctttgtcctctccttcttcctcctcctcctcttcctcctcatctttgtcctctccttcttcctccttttcttcctcctcctcatcctcttcctcttgTCCCCCTCCTCCACTTCCTTCTTTACCTCCTCCTCATCTTTgtcctctttttcttcctcctcctccttttctttctcctccttaTCCTCTTTCTCTcgtcctcctcttcttcctcctcctcctccaatcACTGAGCTCCGATATTTTgtttacagagaaacagagaatatGAATTGTGTGATATATAAAGCTATAAACCACTGCACACCAGCTTCCTCTGTCCTCTTTAATCAATAAAGGCAATAgtactgctcacacacacacacacacacacacacagccaaacaGCTCCTCCCACCTCCGGCACACTGGCTGAGGAACCAATCACCTTCCTCTGTTTCCTACAGAGCCCCTGATTGGACATggtgtattattttttcccaaaaaacaaaaagtgagcaccacatactaaatgATGAGtcccagatactaagtggtgctGAGCATGAGATACTAGgtagtgagcaccacatactgaGAGGTGAGCATCACATGATCAGTACCAGATAGTAATTGGTGAGTGTCCCATACTAAATGGTGAGCACCTGATACTAattggtgagcaccacatactaattGTTGAGTACCACATACTGCAAGGTTGAGCTCCAGATACTAAGTGATGAGCACCAGCTACTATATGGTGAGCTCCAGATACTAGTGTAAGTGGTGAGCAACACATACTAAACGATTACCAGACACTAAGTGGCCAGCACTAGATACTACTTTAAATGATGAACAACACAAATAtgaagtggtgagcaccagatattaAGTGGTAAGCACCATATACAAATAAGTGAGTACCAGATACTAAGCAGTAAGccccacatactaagtggttaTCTCTAATGttaagcaccacatactaagcaCCACTTGAGCTAACAACTAGTAACTGGTGCACactacttagtatctggtgAGCACCTCTtttgtatgttaaaataaatacaccatGTCTCTTCAGTGCTTTGCTGATCCCCCTCTTTTTGCATGCAGATAAAGAAGAAAAGCTCAGCATTGTTTTCTAACATCACACAGATCCTCcttttatatgtatgtttattatgAGTAATGTTTGCAAGTTCGCTTCCTGTAAATACATCAAAAAACATACCAATATATGGAGAGTCATTTGTGTTAAAGAGAATGTTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76924 lncRNA downstream 187289 36411235 ~ 36412749 (-) True G57010
TU76925 lncRNA downstream 187289 36412185 ~ 36412749 (-) False G57010
TU76928 lncRNA downstream 191586 36408175 ~ 36408452 (-) True G57013
TU76904 lncRNA downstream 259002 36298059 ~ 36341036 (-) True G57001
TU76902 lncRNA downstream 268470 36314025 ~ 36331568 (-) True G57000
TU76964 lncRNA upstream 222339 36825767 ~ 36833067 (-) False G57043
TU76963 lncRNA upstream 223966 36827394 ~ 36833067 (-) True G57043
TU76965 lncRNA upstream 223966 36827394 ~ 36839252 (-) False G57043
TU77051 lncRNA upstream 439899 37043327 ~ 37058088 (-) True G57107
TU77074 lncRNA upstream 514016 37117444 ~ 37207042 (-) True G57121
XM_022670587.1 mRNA downstream 107324 36412872 ~ 36492714 (-) True med27
XM_022670585.1 mRNA downstream 214541 36344602 ~ 36385497 (-) False LOC103035014
XM_022670584.1 mRNA downstream 214541 36344602 ~ 36385497 (-) True LOC103035014
XM_022670586.1 mRNA downstream 214543 36344602 ~ 36385495 (-) False LOC103035014
XM_007229100.3 mRNA downstream 259535 36332468 ~ 36340503 (-) True anapc7
XM_022670590.1 mRNA upstream 1979 36605407 ~ 36641563 (-) True LOC103045855
XM_022670592.1 mRNA upstream 1979 36605407 ~ 36641557 (-) False LOC103045855
XM_022670926.1 mRNA upstream 76738 36680166 ~ 36746634 (-) True LOC107196826
XM_022670594.1 mRNA upstream 151738 36755166 ~ 36778310 (-) False LOC103045561
XM_022670593.1 mRNA upstream 151738 36755166 ~ 36778310 (-) True LOC103045561
TU76929 other downstream 196740 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 279343 36319056 ~ 36320695 (-) True G56987
TU76883 other downstream 338496 36253367 ~ 36261542 (-) False LOC103023491
TU76819 other downstream 598869 35998420 ~ 36001169 (-) False unc45b
XR_002650081.1 other downstream 607536 35971730 ~ 35992502 (-) False LOC103036583
TU76959 other upstream 86917 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other upstream 86917 36690345 ~ 36723365 (-) False LOC107196826
TU76973 other upstream 182034 36785462 ~ 36792438 (-) False LOC111192678
TU77626 other upstream 2918116 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 2918116 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile