RNA id: TU76961



Basic Information


Item Value
RNA id TU76961
length 243
RNA type TUCP
GC content 0.61
exon number 3
gene id LOC107196826
representative False

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36680166 ~ 36746634 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AACAGCTGAGAGCTCAGAGTCGCCCACAGAGCGTGTGGGGCGCAGACAGAGCATGCCCGGCAGCACCACCGATAAACCCCTACCCACCATAGACTCTGCAGCCTCCACGCCCTTCAAAGTCACGGGCTTCCTGAGCCGGAGGCTGAAGGGCTCCATCAAACGTACCAAGAGTCAGCCCAAGCTCGACCGCAACAGCAGCTTCCGGAACATCCTGCCGGCCTTCAAGAGCGCCGACAATGACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76927 lncRNA downstream 86917 36600038 ~ 36603428 (-) True G57012
TU76924 lncRNA downstream 277596 36411235 ~ 36412749 (-) True G57010
TU76925 lncRNA downstream 277596 36412185 ~ 36412749 (-) False G57010
TU76928 lncRNA downstream 281893 36408175 ~ 36408452 (-) True G57013
TU76902 lncRNA downstream 358777 36314025 ~ 36331568 (-) True G57000
TU76964 lncRNA upstream 102402 36825767 ~ 36833067 (-) False G57043
TU76963 lncRNA upstream 104029 36827394 ~ 36833067 (-) True G57043
TU76965 lncRNA upstream 104029 36827394 ~ 36839252 (-) False G57043
TU77051 lncRNA upstream 319962 37043327 ~ 37058088 (-) True G57107
TU77074 lncRNA upstream 394079 37117444 ~ 37207042 (-) True G57121
XM_022670590.1 mRNA downstream 48782 36605407 ~ 36641563 (-) True LOC103045855
XM_022670592.1 mRNA downstream 48788 36605407 ~ 36641557 (-) False LOC103045855
XM_022670587.1 mRNA downstream 197631 36412872 ~ 36492714 (-) True med27
XM_022670585.1 mRNA downstream 304848 36344602 ~ 36385497 (-) False LOC103035014
XM_022670594.1 mRNA upstream 31801 36755166 ~ 36778310 (-) False LOC103045561
XM_022670593.1 mRNA upstream 31801 36755166 ~ 36778310 (-) True LOC103045561
XM_022670595.1 mRNA upstream 61943 36785308 ~ 36792444 (-) True LOC111192678
XM_022670596.1 mRNA upstream 73365 36796730 ~ 36818211 (-) True LOC103045252
XM_022670958.1 mRNA upstream 320436 37043801 ~ 37048616 (-) True LOC107197187
TU76929 other downstream 287047 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 369650 36319056 ~ 36320695 (-) True G56987
TU76883 other downstream 428803 36253367 ~ 36261542 (-) False LOC103023491
TU76819 other downstream 689176 35998420 ~ 36001169 (-) False unc45b
XR_002650081.1 other downstream 697843 35971730 ~ 35992502 (-) False LOC103036583
TU76973 other upstream 62097 36785462 ~ 36792438 (-) False LOC111192678
TU77626 other upstream 2798179 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 2798179 39521544 ~ 39562891 (-) False LOC103030299
TU77629 other upstream 2798179 39521544 ~ 39562891 (-) False LOC103030299
TU77630 other upstream 2798179 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile