RNA id: TU76963


Basic Information

Item Value
RNA id TU76963
length 5044
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G57043
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36825767 ~ 36839252 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaagtgttgataaaaatgcagaaaaaaaatccgTAGCTGTTGCATTTAGCGAGGATTATGTGTagccttttttttatgtttcagaaGACAAACGACGAGTTAAACGAAGAATTATCCCTCTAACCCACAGAGATCCAGACAGAGATCCAGGGTTGTCTTCAGGGCAGAAGAAGACAAGCCTCTGTTTCGTTTTCTTCCGTTTCTCTTTCGTTCGTTTTTTATTCTGTCATCGTTCTGGGTTTACGCTTTGTTAAGTAGCCGGGTGTGTCAGGTTCGCGCCGCTGTATCCGACCCCTGCTTTGGTAACTATGAGATAACTGACTGCCCCATGTCGagtaaaaggcgtaattgacCTGCAGGGAAGCAGAGAAGGAATACAGTCGCTCCGGCGGCTCTCAGAGCGATGGGCCCCAATCAGAACAATTTTTCACTCTGACAACTCAATGGCACCATAAAGCGTACAGCACAGCTACCGCCAGGCTTATCGGTGGAGCGGTGAGGTGCTCCATGGGTACAGTGCCCCTATTCTCACAGAGCAGTTTGTTTCATTATGTTGTTCAGGAATTCTCTCACACCGACCCGGGCCGGCGGTCAGGTGGTGGCGCTATTGTAGcattttatggaaaaaaaaaactttatttattttataagaaacagcttcattctgTTCTGATTTACAGAAATCATTGGTCTGAAATAGATGTGCTCGGGCTGCAGATCCTGTCAGTACCAGACTCATTTAGGACCAGTTTCTCCAGACGTTAAATATTAGAGCCAATTCATTTTAGTCCAGGCTTGGATTAATCTggattaatctgtgtgtttactgaacCTTCCAAACGTTCACTTTCACTGTAAAGGAAAGTGTTCAgttcagttccaGAAAGTAGAGCCTGACGCATATGGAAAGTTTATGGCTTATGTcaccaaatcagattttttaagaGACTAACTAATTCAGATAAGTGATAATATCAGCTGATATCAATTTTATGGACTGCTCTTATTAGTCAGCTCATCAAACCAACAACCTTGTCAAAGCAACCAAGCAAAAACTGTacaaatgtacatatattaaatatattaattatattaacttATAAGAACTGTAGATACAACTGCAGAAATAGCCATTAAAGAGTCACTAACCACCTTGATTTTAGCTGATTCCACCACCCTCTTCTCaaagtagtttgggaggggcactgggtatgtgtgatgtatgggtttaggagcGGAACAGGAAcaagagctgattggctaagcTGCATATTGTGTACCATAATaagtacacagaaacatcatccacacctatagcacagttgaacctgaggtTCAGGGTTATAtatagtttagggtttagtgacTCTTTAATATCTGATTCAAACGGTGTAATCCTCATCACTGCCAATATATCTTCTATGCATCCTTTACGTTGGCATTACGATGGATGTCTAGCATGTTTGGTTCCACTGGAGGGCAGTTCAAAGTCAAAAGTTTATGACATTAACACGTAACACACATGGTGACAATTATATAAAAGTGTGTACAgagtttttgtattttagtgaAGCTGCACCCAAAGTgtgttaaagtcGATATCAGCCGATATTAAAGACAGAAGTATTGGTCAGGCTCTACTGTAACGTTTCCTGGGCTGGTAGGGGCGTGTGCAATGTTTCTTAAACTCTTAAATGCAAACTAcctataatttataaatatatataaatatataaataaagtcttTATCTCTAACAAAGCAAGTTTACAGCACAGAGCCAGTTCATGTGTAAATAACTCATGATAAATCATAATCAGTTTGTTAGTAATTCACTTTTTATGGATTCATGTTCATACTTTGATACTCGCTGATCAACATGAATCAGATTAATAGAACTGGTTTATACAGAATGTGAATCGGGAATTGGATCAATTGGAAAGCTTCagcctgcacacacactcacacactctcacacacacacagtatggtGTCACAGTCTCCAAGTGTGGAAATGTGTCCGTCTGTTCTGTTATTTTATCTGTTATCTGTTAAAATGATGATATTTGATGttattgtacaaaaaaagaaaatttgatTGTTGTTTTGAGATGGAAGGTGtctgcacttaaaaaaaaaagcaaaacaaagcaGTGTTTTCATAGCAACGTGTCACctttatatttttactgaaaaaaaaaatgtgtaagaaGTGAGAATGGCACAGTTTTCCCCTCACGCTGGAAATGAACAGCCGTCGCAATTTTAGTGGTGTTATTTTTGCAAATACTGAAAGCTAAAGAGGAAAAGTGTGATGATTCCTGGTGAAAGGCCAGTATTTACGTGTCGAAAAGCTAACTCACTGTCAGCGGAGCTCGGAATTACAGCACCATGAATAACTGTCAATGGCCCTTCAAAAGTAATGCACTCAGGCAAGCTGacgtttattattttattttttcttttccacgATTATGTGACACATTAACTCCCTCAATAAGCCGAGCCCGATGCCTCCGCCAGCAGCCAGCGCCTGAGAGATGAAGTGATTTTTATAGGGGATGATGTCCTATAGACGGAACGGGTTTGACAGCTAAAATATTCCCCTCAGACGAGAATGGAGGGCTTTTTGTTCCAGCATGCAGCGACAAGGCTAATGCCATTACCTGCACCATTTCACCGGCTCCACAGTGAGGGGAAAGCTTTTCACACAGCGCTCTGCGTACGTCTCCTCCTTCCCTGCTAttccactgcttaaaaatgtCAGAGACTACTGTTCAGAAGTTTGGAAAGACTTTTTATAACAGTtcttttttacttatatatacatatctggaaaaaaatatgtatatttatagatttatgtttgattaaaatgaacattgttgtgttatttcaaataaaaatattgtcatttagagcatttatttatttgcagaaaattagaaatggctgaaataaccaaaaaaagatgcagagctttcagaatataatcaaaaggaagatggatgatcacaagccatcaaaccaaaccaagctgaactgcataaagttattcaaaagcagtgtgtaagactggtggaggaggagaacatgatgccaagattatttctgaactcttaaaattactttatgaatatgaacttgttttctttttttttttgcatcgtttttttgttatttcagccatttctcattttctgtaaataaattctctaaatgagaatatttttatgtggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaacaaatttagaaactgtttttttttacagcgctGAATGTGTTAAAAGGGTTAAGTTATGTAATACTTGTAAAAAGCTgttgggagtcttgcccaagggtttttatatatattggtGTAGTGTAGCAGGTAATCATACCATAGTCTTTTTAGAGGTATGTTAGGGTTGTTATCCATTACACTACAACATCTAAATGTCATAATGCTCTTCTCAGCTTCTGCACAGTAAAGTtgtcagtgttaaattaacagttTGTTTAAATTCTACTGTGTGGAAATCTGTAAAAGTTGTTAATcagtgtttccaaacttttgaacggtgcTTTGGGTGCTTTATTTTAATACGAGCACAAAGAAATACTTATCTGAAAGGCGAAGGCCTCAGGACGCTCACTATAAGGGGATCTCTGAAACTGTACCTGCCTCCTGTTCACCTATAGGCCTGGTCCACTCATCCACTCAACCTGTATGAGCAAAATCCCATCCTTCACCTTCTCCATCTGACAGCATCTCTCACCCTCAACCTTCTCAACCCCCTCAAAACCCTCAAAACCCCCAAAACCCTCAACACTTACAGACTCTATGACCAAGTACAGCAGGAGGGATTCAGAATTCTGTAAATGGGAAAAGATTGAGGATCAGATCAGcgcttttctctcttttaaagGAAATTCAGTCTTTCAGCATTCGGCATGCTCCGTCCTATACAGGCTCTCTTATTCCAGCTGGACCTTATTTCTCGTCTCGTAGGCCTCGCtccatccttccttcctttctctgtttctgttttccctctttttcttttctgtgtctCAATGTTCTGAGTGACATTTAATAAACCTTCAGAATTTCTAAACTATCTGGTGTGAATAAAgagctgttttgctgttttattaaaggCAATGAGACGAAACTCGGAGATGTGCGTCTGGATGGAATTAAAActactggaggaccacagagttcagagaaaaacagtagataattcagcctgtaaaaaCACGTACgtggtcgttctggacgggaataaaattacagaggataaaaaaaaaacataaataagaaagaattaccccagaaccccctgagaacaAAACTATTggaagcacctttattttaagagtgtatAAAAGGTTTTTTAAGTCACATTTTTGTCATGTCTCAAGATTTAATCAACTTACTTTAGTTGcattattaaattgttttttagaatcatttttagaaacattttagaaTCATCTAGTTCTAAAATCATTCTAGGTCAAAAAGTTGCATTTTGACACTTTTACTCAAATGTACTTAAGTTACACTTTGACATTTATTATCATATTAGACAaagacgtctgagaaaaacacgtacatggtcgttctggacgggaataaaatcacagaggataaaaacccccataaaagagatgagaaactaatcccatctggacAGGGCTTATGCATCAGTCTTTCTTCcattctctgtttctgttttcccTGCTTTCCTTTTCTTTGGTTCAACCTATGAAACGTGTCTCAATGTTCTGAGTGACATTTAATAAACCTTCAGAATTTCTAAACTATCTCTCTTTAATGCGTGTGGTGTGTTTGGGAGGCGGAGGTAAAGCGTATCACCGTGTGGTAATTACTCCTCCGCGGTCAGCCGGCACACAGCGGCTGCGGGTCAACTCATTAGTAAGTAATTGACTAGATGGACCGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76927 lncRNA downstream 223966 36600038 ~ 36603428 (-) True G57012
TU76924 lncRNA downstream 414645 36411235 ~ 36412749 (-) True G57010
TU76925 lncRNA downstream 414645 36412185 ~ 36412749 (-) False G57010
TU76928 lncRNA downstream 418942 36408175 ~ 36408452 (-) True G57013
TU76902 lncRNA downstream 495826 36314025 ~ 36331568 (-) True G57000
TU77051 lncRNA upstream 210260 37043327 ~ 37058088 (-) True G57107
TU77074 lncRNA upstream 284377 37117444 ~ 37207042 (-) True G57121
TU77107 lncRNA upstream 342234 37175301 ~ 37181186 (-) True G57147
TU77110 lncRNA upstream 351373 37184440 ~ 37186552 (-) True G57149
TU77128 lncRNA upstream 397131 37230198 ~ 37237667 (-) True G57166
XM_022670596.1 mRNA downstream 9183 36796730 ~ 36818211 (-) True LOC103045252
XM_022670595.1 mRNA downstream 34950 36785308 ~ 36792444 (-) True LOC111192678
XM_022670594.1 mRNA downstream 49084 36755166 ~ 36778310 (-) False LOC103045561
XM_022670593.1 mRNA downstream 49084 36755166 ~ 36778310 (-) True LOC103045561
XM_022670926.1 mRNA downstream 80760 36680166 ~ 36746634 (-) True LOC107196826
XM_022670958.1 mRNA upstream 210734 37043801 ~ 37048616 (-) True LOC107197187
XM_022670597.1 mRNA upstream 217653 37050720 ~ 37061698 (-) True slc2a6
XM_022670612.1 mRNA upstream 448046 37281113 ~ 37299298 (-) True brpf3
XM_022670613.1 mRNA upstream 469062 37302129 ~ 37326736 (-) True LOC103043112
XM_022670620.1 mRNA upstream 557375 37390442 ~ 37476012 (-) True LOC111192681
TU76973 other downstream 34956 36785462 ~ 36792438 (-) False LOC111192678
TU76959 other downstream 89180 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other downstream 104029 36690345 ~ 36723365 (-) False LOC107196826
TU76929 other downstream 424096 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 506699 36319056 ~ 36320695 (-) True G56987
TU77626 other upstream 2688477 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 2688477 39521544 ~ 39562891 (-) False LOC103030299
TU77629 other upstream 2688477 39521544 ~ 39562891 (-) False LOC103030299
TU77630 other upstream 2688477 39521544 ~ 39562891 (-) False LOC103030299
TU77631 other upstream 2688477 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile