RNA id: TU76973


Basic Information

Item Value
RNA id TU76973
length 522
RNA type TUCP
GC content 0.53
exon number 4
gene id LOC111192678
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36785308 ~ 36792444 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAATGGCGACTTGCAGAGGCTCGGTTTAAGCGGAGCAGAGCAGCTCAGGACTGAAAAACTCACTTTATTCCGCGAATGGAAGCGCTTACAGCGGGCTAAACACTCCGGGAACAACTTCCACCCTCCTGAGGAGAGGAGAAATCAGCACGGGACTGTAGGCGTGTGAGGTAAGTATGTTGGAGGGAGCCTACCGGGACAGCTACCTGGCTGTGGGTCCGGACGAGCTAGACGCCAAACGGCTGCTGCCCAAACTTGAGACAGTTTGCAGTGATCTCGAGAGCAAGCTCACCGTCGGGCAGTACGTCCTCTGCCGTTGGTCTGACGGCCTCTATTACCTGGGGAGGATTCAGAGGGTGAGCTCTTCAAAGCAGAGCTGCTTTGTCACATTTGAGGACAACTCTAAGTTCTGGGTGCTGTGGAAGGACATTCAGCATGCCGGCGTCCCTGGAGAGGAGCCCAAATGCTACTTGTGCTCTGAGACGACTATGATGTCTGATAATAAAATACTTATCTGTGGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76927 lncRNA downstream 182034 36600038 ~ 36603428 (-) True G57012
TU76924 lncRNA downstream 372713 36411235 ~ 36412749 (-) True G57010
TU76925 lncRNA downstream 372713 36412185 ~ 36412749 (-) False G57010
TU76928 lncRNA downstream 377010 36408175 ~ 36408452 (-) True G57013
TU76902 lncRNA downstream 453894 36314025 ~ 36331568 (-) True G57000
TU76964 lncRNA upstream 33329 36825767 ~ 36833067 (-) False G57043
TU76963 lncRNA upstream 34956 36827394 ~ 36833067 (-) True G57043
TU76965 lncRNA upstream 34956 36827394 ~ 36839252 (-) False G57043
TU77051 lncRNA upstream 250889 37043327 ~ 37058088 (-) True G57107
TU77074 lncRNA upstream 325006 37117444 ~ 37207042 (-) True G57121
XM_022670594.1 mRNA downstream 7152 36755166 ~ 36778310 (-) False LOC103045561
XM_022670593.1 mRNA downstream 7152 36755166 ~ 36778310 (-) True LOC103045561
XM_022670926.1 mRNA downstream 38828 36680166 ~ 36746634 (-) True LOC107196826
XM_022670590.1 mRNA downstream 143899 36605407 ~ 36641563 (-) True LOC103045855
XM_022670592.1 mRNA downstream 143905 36605407 ~ 36641557 (-) False LOC103045855
XM_022670596.1 mRNA upstream 4292 36796730 ~ 36818211 (-) True LOC103045252
XM_022670958.1 mRNA upstream 251363 37043801 ~ 37048616 (-) True LOC107197187
XM_022670597.1 mRNA upstream 258282 37050720 ~ 37061698 (-) True slc2a6
XM_022670612.1 mRNA upstream 488675 37281113 ~ 37299298 (-) True brpf3
XM_022670613.1 mRNA upstream 509691 37302129 ~ 37326736 (-) True LOC103043112
TU76959 other downstream 47248 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other downstream 62097 36690345 ~ 36723365 (-) False LOC107196826
TU76929 other downstream 382164 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 464767 36319056 ~ 36320695 (-) True G56987
TU76883 other downstream 523920 36253367 ~ 36261542 (-) False LOC103023491
TU77626 other upstream 2729106 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 2729106 39521544 ~ 39562891 (-) False LOC103030299
TU77629 other upstream 2729106 39521544 ~ 39562891 (-) False LOC103030299
TU77630 other upstream 2729106 39521544 ~ 39562891 (-) False LOC103030299
TU77631 other upstream 2729106 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile