RNA id: XM_022670613.1


Basic Information

Item Value
RNA id XM_022670613.1
length 1975
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC103043112
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37302047 ~ 37326736 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCCCCTTGCCGTAGGGCGACTTCAGCAGACGGAGCGAGCGAGCGCGAGACTCCAGCCCGGTTTTCACGTCGTCGTCGTCGCGCGCGCGCACCGCGATAATGCTGGCCGGGAGCCGCGCGAGCTGCAGGGCGGTACGGTAGACGGGCGGGTTGTTTCCCCGCGCGAGCTCGAGTTCACCCATGGAGCCGCAGCCCGGATTCACGCGCGAGGAGATCAACAGCACGGTGTGGGAGGTGCCGGAGAAGTACGTGCGCTTAAAGCAGATTGGGACCGGAGCCTACGGTACCGTGTGCTCAACCATCAATGAGAAGACCAAAGAGAAAGTGGCCATCAAGAAGCTGCACAGGCCCTTCCAGTCGGAGATCTTTGCGAAGAGGGCGTACCGGGAGCTGCGGCTGCTCAAACACATGAAGCACGAGAATGTGATCGGACTGCTGGACGTGTTCACTCCCGCCACCCGCCTGGAAACCTTTCAGGACTTCTACCTGGTGATGCCGTACATGTACACGGACCTGTCCAAGGTTCGAGGTCTGCTCTCAGAGGACCGGGTTCAGTTCCTCGTCTATCAGATGCTCTGTGGACTGAAGTACATTCACAGCGCTGGCATCATTCACAGGgatCTTAAGCCCGGGAACCTGGCTGTAAATCAGGACTGTGAGCTGAAGATCCTGGACTTCGGCCTGGCGCGGCATGCAGATGCAGAGATGACGGGTTACGTTGTGACGAGGTGGTACAGAGCGCCGGAGGTCATTCTGAACTGGATGCACTACACCCAGACAGTGGATATCTGGTCAGTTGGGTGCATAATGGGAGAAATGTTCAATGGCAAGACACTCTTCAAGGGAAAAGACTATTTGCTAGTTTACCAGATTCAATTGTTGGCAtcatttacaaataaaacaaataaaatattttatcaacTAATTTGATTTAGCTTaatgaattatattttaaattttattaaaaattgtgaaCTATGTACATATATACGTTTTCTGAATCTGAATTAATCTGATGTTTATTCAGCGGTGGACCTGCTGGAGAAGATGCTGGTTTTAGATGCAGGAGCTCGCCTCACTGCTGATGGAGCGCTGGCCCATAGTTATTTCAACGGCCTGAGGGATCCAGAGGACTGCCCGGAGCCTAAACCATATGATGACAGTTATGACAATGCTACACTGCCCCTAGAGGAGTGGAGACGACTATCATTTAAAGAAGTGAAGAGTTTTGTCCCGTTCCCGAGACGAGACTCGAAGAGGAGAAACACGCTGACGATGACTCAGTGAAGCTCTGCCTGCGGCTgattttacactattttaaagACACGTTTAAAGCAGAAGAACAGTGTGGAAGCTGTTTACACACTCAGCTGTTACAAACTGAAATATTTTCATGACAATCTACGAGAATCGATGATGAATGTTTGAGTTCTGTGGACCTGATAAGTGGACTTAAGGATGTACTGCTGTTACAGTGGTGGCTGGCTTTCGTTTGTTGCCAATTTGCCTTTAAGTGCTGTGTTGGAACAGTTGTTTAAAAAGTAGTTAAGATGTTTTCTTTGACATTGTGGCTTCTCGTGCTCAGAAGAAAAGTGTTATCACGTTGGaggttgtaaataaatacagattctTGCTGATGCTTAAGACCTTAAGAGCTGTACAGTTTTTCACTATGCCCATCTGTCAAAATATCATTTGTCAGAATTTAGCGAATTAAAGTTAGTCTATTAAGAaaatctttgtttgttttcttattcGAATTGCCAAAAGCACTATAAAACAAATccagattatatttttaattattagtataAGAAAAGGTCCTGAAGCAGAGCAGTTTTAAGAGACACACCTGCACAACTTTTTCACCTttactgttgaaaaaaaaaatagatcttGGCTCTTGTTCTTTACACTTTCAAAAAGTTTCTCATGACAAAtgaaccaataaaaatgctccaaaatgacttacaa

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77126 lncRNA downstream 2522 37281141 ~ 37299607 (-) False brpf3
TU77142 lncRNA downstream 48330 37249860 ~ 37253799 (-) True G57178
TU77138 lncRNA downstream 56748 37240655 ~ 37245381 (-) True G57176
TU77128 lncRNA downstream 64462 37230198 ~ 37237667 (-) True G57166
TU77127 lncRNA downstream 64462 37236402 ~ 37237667 (-) False G57166
TU77189 lncRNA upstream 54340 37381076 ~ 37389419 (-) True G57218
TU77196 lncRNA upstream 118998 37445734 ~ 37446043 (-) True G57225
TU77248 lncRNA upstream 317464 37644200 ~ 37675261 (-) True G57272
TU77342 lncRNA upstream 519323 37846059 ~ 37846284 (-) True G57351
TU77356 lncRNA upstream 734488 38061224 ~ 38126192 (-) True G57364
XM_022670612.1 mRNA downstream 2831 37281113 ~ 37299298 (-) True brpf3
XM_022670597.1 mRNA downstream 240431 37050720 ~ 37061698 (-) True slc2a6
XM_022670958.1 mRNA downstream 253513 37043801 ~ 37048616 (-) True LOC107197187
XM_022670596.1 mRNA downstream 483918 36796730 ~ 36818211 (-) True LOC103045252
XM_022670595.1 mRNA downstream 509685 36785308 ~ 36792444 (-) True LOC111192678
XM_022670620.1 mRNA upstream 63706 37390442 ~ 37476012 (-) True LOC111192681
XM_022670617.1 mRNA upstream 221023 37547759 ~ 37599298 (-) False tbc1d22b
XM_022670616.1 mRNA upstream 221023 37547759 ~ 37599298 (-) True tbc1d22b
XM_007251369.2 mRNA upstream 304321 37631057 ~ 37635455 (-) True LOC103031835
XM_022670928.1 mRNA upstream 481812 37808548 ~ 37842410 (-) True LOC103047788
TU76973 other downstream 509691 36785462 ~ 36792438 (-) False LOC111192678
TU76959 other downstream 563915 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other downstream 578764 36690345 ~ 36723365 (-) False LOC107196826
TU76929 other downstream 898831 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 981434 36319056 ~ 36320695 (-) True G56987
TU77626 other upstream 2194808 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 2194808 39521544 ~ 39562891 (-) False LOC103030299
TU77629 other upstream 2194808 39521544 ~ 39562891 (-) False LOC103030299
TU77630 other upstream 2194808 39521544 ~ 39562891 (-) False LOC103030299
TU77631 other upstream 2194808 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile